View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20094_low_105 (Length: 203)

Name: NF20094_low_105
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20094_low_105
NF20094_low_105
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-203)||(143012-143214)
scaffold0002 (1-203)||(132964-133166)
[»] chr3 (15 HSPs)
chr3 (1-203)||(13163774-13163976)
chr3 (1-203)||(13173822-13174024)
chr3 (1-196)||(13346908-13347103)
chr3 (1-203)||(13335698-13335900)
chr3 (71-195)||(10431187-10431311)
chr3 (71-195)||(10583312-10583436)
chr3 (155-203)||(12131041-12131089)
chr3 (66-195)||(10531580-10531709)
chr3 (66-195)||(10680378-10680507)
chr3 (71-195)||(9841657-9841781)
chr3 (71-195)||(10360947-10361071)
chr3 (66-125)||(10372983-10373042)
chr3 (71-125)||(9980335-9980389)
chr3 (61-195)||(10892117-10892251)
chr3 (61-195)||(11128153-11128287)
[»] scaffold0083 (1 HSPs)
scaffold0083 (71-125)||(54748-54802)


Alignment Details
Target: scaffold0002 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 143012 - 143214
Alignment:
Q  1 aagagaggatggaaaagtgtcttttgaaagagactcaagccttgtacaattataaaagctaagtgttttaagagaggataggtgtcggagtccatttcca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  143012 aagagaggatggaaaagtgtcttttgaaagagactcaagccttggacaattataaaagctaagtgttttaagagaggataggtgtcggagtccatttcca 143111  T
Q  101 tcaaaggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  143112 tcaaaggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtcac 143211  T
Q  201 ctc 203  Q
    |||    
T  143212 ctc 143214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 132964 - 133166
Alignment:
Q  1 aagagaggatggaaaagtgtcttttgaaagagactcaagccttgtacaattataaaagctaagtgttttaagagaggataggtgtcggagtccatttcca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  132964 aagagaggatggaaaagtgtcttttgaaagagactcaagccttggacaattataaaaacaaagtgtttcaagagaggataggtgtcggagtccatttcca 133063  T
Q  101 tcaaaggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtcac 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  133064 tcaatggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtaac 133163  T
Q  201 ctc 203  Q
    |||    
T  133164 ctc 133166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 13163976 - 13163774
Alignment:
Q  1 aagagaggatggaaaagtgtcttttgaaagagactcaagccttgtacaattataaaagctaagtgttttaagagaggataggtgtcggagtccatttcca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13163976 aagagaggatggaaaagtgtcttttgaaagagactcaagccttggacaattataaaagctaagtgttttaagagaggataggtgtcggagtccatttcca 13163877  T
Q  101 tcaaaggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13163876 tcaaaggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtcac 13163777  T
Q  201 ctc 203  Q
    |||    
T  13163776 ctc 13163774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 13174024 - 13173822
Alignment:
Q  1 aagagaggatggaaaagtgtcttttgaaagagactcaagccttgtacaattataaaagctaagtgttttaagagaggataggtgtcggagtccatttcca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  13174024 aagagaggatggaaaagtgtcttttgaaagagactcaagccttggacaattataaaaacaaagtgtttcaagagaggataggtgtcggagtccatttcca 13173925  T
Q  101 tcaaaggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtcac 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13173924 tcaatggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtaac 13173825  T
Q  201 ctc 203  Q
    |||    
T  13173824 ctc 13173822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 13347103 - 13346908
Alignment:
Q  1 aagagaggatggaaaagtgtcttttgaaagagactcaagccttgtacaattataaaagctaagtgttttaagagaggataggtgtcggagtccatttcca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  13347103 aagagaggatggaaaagtgtcttttgaaagagactcaagccttgaacaattataaaagccaagtgttttaagagaggataggtgtccgagtccatttcca 13347004  T
Q  101 tcaaaggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcg 196  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13347003 tcaaaggattgtatttcacagagattagaaatatccaaagacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcg 13346908  T

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Target: chr3; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 13335900 - 13335698
Alignment:
Q  1 aagagaggatggaaaagtgtcttttgaaagagactcaagccttgtacaattataaaagctaagtgttttaagagaggataggtgtcggagtccatttcca 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| | ||  || | |||||||| |||||||||||||||||||||||||||||||    
T  13335900 aagagaggatggaaaagtgtcttttgaaagagactcaagtcttggacagtcatttaaacaaagtgtttcaagagaggataggtgtcggagtccatttcca 13335801  T
Q  101 tcaaaggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtcac 200  Q
    |||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13335800 tcaatggattttatttcacagagattagaaatactcaaagacacaagtgaaattggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtcac 13335701  T
Q  201 ctc 203  Q
    |||    
T  13335700 ctc 13335698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 195
Target Start/End: Original strand, 10431187 - 10431311
Alignment:
Q  71 agagaggataggtgtcggagtccatttccatcaaaggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagcaaccgctcct 170  Q
    |||||||| |||||||| || ||||||||||||||||| || |||||| |||||| ||  ||||| | | ||||||| || || || ||||||  |||||    
T  10431187 agagaggagaggtgtcgcagcccatttccatcaaaggacttcatttcagagagatcagtgatatatagatacacaagggagatgggtagcaacgactcct 10431286  T
Q  171 tcagcaaggtgttaacaatatcatc 195  Q
    ||| |||||||||||  ||||||||    
T  10431287 tcatcaaggtgttaaatatatcatc 10431311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 10583436 - 10583312
Alignment:
Q  71 agagaggataggtgtcggagtccatttccatcaaaggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagcaaccgctcct 170  Q
    |||||||| |||||||| || ||||||||||||||||| || |||||| |||||||  | ||||| | | ||||||| || || || ||||||  |||||    
T  10583436 agagaggagaggtgtcgcagcccatttccatcaaaggacttcatttcagagagattccagatatatagatacacaagggagatgggtagcaacgactcct 10583337  T
Q  171 tcagcaaggtgttaacaatatcatc 195  Q
    ||| |||||||||||  ||||||||    
T  10583336 tcatcaaggtgttaaatatatcatc 10583312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 12131089 - 12131041
Alignment:
Q  155 ggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtcacctc 203  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  12131089 ggcagcaactgctccttcaacaaggtgttaacaatatcatcgtcacctc 12131041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 195
Target Start/End: Complemental strand, 10531709 - 10531580
Alignment:
Q  66 ttttaagagaggataggtgtcggagtccatttccatcaaaggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagcaaccg 165  Q
    |||| |||||||| |||||||| ||||||||||| ||||| || ||||||||| |||||| |  |||| | | ||||||||| || || || |||||       
T  10531709 ttttgagagaggagaggtgtcgaagtccatttccttcaaatgactttatttcagagagatgaccaatagatagagacacaagggagatgggaagcaatga 10531610  T
Q  166 ctccttcagcaaggtgttaacaatatcatc 195  Q
    ||| ||||||| ||||||||| ||||||||    
T  10531609 ctcgttcagcacggtgttaactatatcatc 10531580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 195
Target Start/End: Complemental strand, 10680507 - 10680378
Alignment:
Q  66 ttttaagagaggataggtgtcggagtccatttccatcaaaggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagcaaccg 165  Q
    |||| |||||||| |||||||| ||||||||||| ||||  || ||||||||| |||||| |  |||| | | ||||||||| || || || |||||       
T  10680507 ttttgagagaggagaggtgtcgaagtccatttccttcaagtgactttatttcagagagatgaccaatagatagagacacaagggagatgggaagcaatga 10680408  T
Q  166 ctccttcagcaaggtgttaacaatatcatc 195  Q
    ||| ||||||| ||||||||| ||||||||    
T  10680407 ctcgttcagcacggtgttaactatatcatc 10680378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 9841781 - 9841657
Alignment:
Q  71 agagaggataggtgtcggagtccatttccatcaaaggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagcaaccgctcct 170  Q
    |||||||| |||||||| || ||||||||||||||||| || |||||| ||||||     ||||  | ||||||||| || || || ||||||  |||||    
T  9841781 agagaggagaggtgtcgaagcccatttccatcaaaggacttcatttcagagagatccctgatatttagagacacaagggagatgggtagcaacgactcct 9841682  T
Q  171 tcagcaaggtgttaacaatatcatc 195  Q
    ||| |||||||||||  ||||||||    
T  9841681 tcatcaaggtgttaaatatatcatc 9841657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 195
Target Start/End: Original strand, 10360947 - 10361071
Alignment:
Q  71 agagaggataggtgtcggagtccatttccatcaaaggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagcaaccgctcct 170  Q
    |||||||| |||||||| || ||||||||||||||||| || |||||| |||||| |   || | || ||||||||| || |  || |||||   |||||    
T  10360947 agagaggagaggtgtcgaagcccatttccatcaaaggacttcatttcagagagatgatggatttccagagacacaagggagacgggtagcaatgactcct 10361046  T
Q  171 tcagcaaggtgttaacaatatcatc 195  Q
    ||| |||||||||||| ||||||||    
T  10361047 tcatcaaggtgttaactatatcatc 10361071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 10372983 - 10373042
Alignment:
Q  66 ttttaagagaggataggtgtcggagtccatttccatcaaaggattttatttcacagagat 125  Q
    |||| |||||||| |||||||| || ||||||||||||||||| || |||||| ||||||    
T  10372983 ttttgagagaggagaggtgtcgaagcccatttccatcaaaggacttcatttcagagagat 10373042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 9980389 - 9980335
Alignment:
Q  71 agagaggataggtgtcggagtccatttccatcaaaggattttatttcacagagat 125  Q
    |||||||| |||||||| || ||||||||||||||||| || |||||| ||||||    
T  9980389 agagaggagaggtgtcgcagcccatttccatcaaaggacttcatttcagagagat 9980335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 195
Target Start/End: Complemental strand, 10892251 - 10892117
Alignment:
Q  61 aagtgttttaagagaggataggtgtcggagtccatttccatcaaaggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagc 160  Q
    ||||||||  |||||||| |||||||| || ||||||||| | ||| |||| |||||| ||||||||   ||  ||| | |||  |  ||||  ||||||    
T  10892251 aagtgtttccagagaggagaggtgtcgaagcccatttccacctaagcatttcatttcagagagattacttattgacagaaacattaaggaaacaggcagc 10892152  T
Q  161 aaccgctccttcagcaaggtgttaacaatatcatc 195  Q
    ||  ||||||||| |||||||||||||||||||||    
T  10892151 aattgctccttcaacaaggtgttaacaatatcatc 10892117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 195
Target Start/End: Original strand, 11128153 - 11128287
Alignment:
Q  61 aagtgttttaagagaggataggtgtcggagtccatttccatcaaaggattttatttcacagagattagaaatatacaaagacacaagtgaaattggcagc 160  Q
    |||||||| ||||||||| |||||||| || ||||||||| | ||| |||| | |||| ||||||||   ||  ||| | |||  |  ||||  ||||||    
T  11128153 aagtgtttcaagagaggagaggtgtcgaagcccatttccacctaagcatttcacttcagagagattacttattgacagaaacattaaggaaacaggcagc 11128252  T
Q  161 aaccgctccttcagcaaggtgttaacaatatcatc 195  Q
    ||  ||||||||| |||||||||||||||||||||    
T  11128253 aattgctccttcaacaaggtgttaacaatatcatc 11128287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 54748 - 54802
Alignment:
Q  71 agagaggataggtgtcggagtccatttccatcaaaggattttatttcacagagat 125  Q
    |||||||| |||||||| || ||||||||||||||||| || |||||| ||||||    
T  54748 agagaggagaggtgtcgcagcccatttccatcaaaggacttcatttcagagagat 54802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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