View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_11 (Length: 607)
Name: NF20094_low_11
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_11 |
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| [»] scaffold0038 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 6e-88; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 28154855 - 28155039
Alignment:
| Q |
15 |
cacttctgaaaaatgaatggatccatgtagagattacatgcaggtcttagatgataacaacactctttacagattttggaatccatgtatcaaagcagaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
28154855 |
cacttctgaaaaatgaatggatccatgtagagattacatgcaggtctttgatgatgacaacactcgttacagattttggaatccatgtattaaagcagaa |
28154954 |
T |
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| Q |
115 |
aagtagcatggcggatattcaattcactgatccttgtaaaaagagaaaattattggattgcgaagacgatgattgcagtagttca |
199 |
Q |
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| T |
28154955 |
aagtagcatggcggatattcaattcaccgatccttgtaaaaagagaaaattattggattgcgaagacgatgattgcagtagttca |
28155039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 211 - 522
Target Start/End: Original strand, 28155862 - 28156172
Alignment:
| Q |
211 |
tctttggtctaaaggtgagcagaaagaaatgacatacgaagctttaaaatctcaccctgcatcgacaaaacaaaaggaaagggaatgatagtg--gtatg |
308 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
28155862 |
tctttggtctaaaggtgagcagaa----atgacatacgaagctttaaaatctcactctgcatcgacaaaacaaaaggaaaggg-atgatagtgttatatg |
28155956 |
T |
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| Q |
309 |
tgatagtatgttctcgggaatttattccttg----taagttgtagctattgtgcataggtaatgaaaactgaaaagtgaggtcaatttcaactttgagtc |
404 |
Q |
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| T |
28155957 |
tgatagtatgttctcaggaatttaatccttgtatataagttgtaactattgttcataggtaa-------tgaaaagtgaggttaatttcatctttgagtc |
28156049 |
T |
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| Q |
405 |
gttgttatagttgtgtaaatatcggagcttgtttactaacttaattcctttgtagttcatgctatttcgatagtaagggaatta-----tgctctccttt |
499 |
Q |
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| T |
28156050 |
gttgatatagtttactaattgttggagcttgtttactaacttaattccttggtagttcatgctatgtctatagcaaaggaattatgcattgctctccttt |
28156149 |
T |
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| Q |
500 |
attttgattatgcagctactatt |
522 |
Q |
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|||||||||||| | |||||||| |
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| T |
28156150 |
attttgattatgtacctactatt |
28156172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 385 - 522
Target Start/End: Original strand, 28224363 - 28224500
Alignment:
| Q |
385 |
gtcaatttcaactttgagtcgttgttatagttgtgtaaatatcggagcttgtttactaacttaattcctttgtagttcatgctatttcgatagtaaggga |
484 |
Q |
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|||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| || |||||| || ||||||| || |
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| T |
28224363 |
gtcattttcatctttgagtcgttcatatagtttcgtaaatatcggagcttgtttactaacttaattccttggtaatttgtgctatgtccatagtaaaaga |
28224462 |
T |
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| Q |
485 |
attatgctctcctttattttgattatgcagctactatt |
522 |
Q |
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| T |
28224463 |
attatgctctcctttattttgattatgtagctactatt |
28224500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 28179496 - 28179592
Alignment:
| Q |
89 |
tttggaatccatgtatcaaagcagaaaagtagcatggcggatattcaattcactgatccttgtaaaaagagaaaattattggattgcgaagacgatg |
185 |
Q |
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|||||||||||||||| ||||| | ||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28179496 |
tttggaatccatgtattaaagccgtaaagtagcatgacggatattcaattcaccgatccttgtaaaaagagaaagttattggattgcgaagacgatg |
28179592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 205 - 313
Target Start/End: Original strand, 28179650 - 28179751
Alignment:
| Q |
205 |
ggtatctctttggtctaaaggtgagcagaaagaaatgacatacgaagctttaaaatctcaccctgcatcgacaaaacaaaaggaaagggaatgatagtgg |
304 |
Q |
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||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| |||| ||||||||||||||||||| ||| |
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| T |
28179650 |
ggtatctttttggtctaaaggtgagcagaaa---atgacatatgaagctttaaaatctctccctgcat----aaaataaaaggaaagggaatgataatgg |
28179742 |
T |
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| Q |
305 |
tatgtgata |
313 |
Q |
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||||||||| |
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| T |
28179743 |
tatgtgata |
28179751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 548 - 592
Target Start/End: Original strand, 28224630 - 28224674
Alignment:
| Q |
548 |
tttggtatgttttcaataaaatcacgtagatttcaataaaggttt |
592 |
Q |
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| T |
28224630 |
tttggtatgttttcaataaaatcttgtagatttctataaaggttt |
28224674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 28179789 - 28179836
Alignment:
| Q |
295 |
atgatagtggtatgtgatagtatgttctcgggaatttattccttgtaa |
342 |
Q |
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| T |
28179789 |
atgatagtggtatgtgacaggatgttctcaggaatttattcattgtaa |
28179836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 28143032 - 28143106
Alignment:
| Q |
75 |
cactctttacagattttggaatccatgtatcaaagcagaaaagtagcatggcggatattcaattcactgatcctt |
149 |
Q |
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||||| ||||| ||| |||||| ||||||| ||||||||||| |||||| ||||||| |||||||||||||| |
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| T |
28143032 |
cactccttacaaattgtggaattcatgtattcaagcagaaaagcagcatgaatgatattcgattcactgatcctt |
28143106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 29829492 - 29829528
Alignment:
| Q |
113 |
aaaagtagcatggcggatattcaattcactgatcctt |
149 |
Q |
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| T |
29829492 |
aaaagtagcttggaggatattcaattcactgatcctt |
29829528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 385 - 522
Target Start/End: Original strand, 24861 - 24998
Alignment:
| Q |
385 |
gtcaatttcaactttgagtcgttgttatagttgtgtaaatatcggagcttgtttactaacttaattcctttgtagttcatgctatttcgatagtaaggga |
484 |
Q |
| |
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|||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| || |||||| || ||||||| || |
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| T |
24861 |
gtcattttcatctttgagtcgttcatatagtttcgtaaatatcggagcttgtttactaacttaattccttggtaatttgtgctatgtccatagtaaaaga |
24960 |
T |
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| Q |
485 |
attatgctctcctttattttgattatgcagctactatt |
522 |
Q |
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||||||||||||||||||||||||||| |||||||||| |
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| T |
24961 |
attatgctctcctttattttgattatgtagctactatt |
24998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 548 - 592
Target Start/End: Original strand, 25128 - 25172
Alignment:
| Q |
548 |
tttggtatgttttcaataaaatcacgtagatttcaataaaggttt |
592 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
25128 |
tttggtatgttttcaataaaatcttgtagatttctataaaggttt |
25172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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