View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_12 (Length: 603)
Name: NF20094_low_12
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 538; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 16 - 565
Target Start/End: Complemental strand, 39573405 - 39572856
Alignment:
| Q |
16 |
gtttttgtatactgctactttgattattggtgtcaggaattgtaattcagtgcaaccactgataggtatagagagagtagtcttttatagggaaagggct |
115 |
Q |
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| T |
39573405 |
gtttttgtatactgctactttgattattggtgtcaggaattgtaattcagtgcaaccactgataggtatagagagagtagtcttttatagggaaagggct |
39573306 |
T |
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| Q |
116 |
gctggaatgtattcggcattggcatatgctgtttctcaggcaagcattgaattagtctatattttacgtagtcccatgtatgtaaacaaaattgtgtcta |
215 |
Q |
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| T |
39573305 |
gctggaatgtattcggcattggcatatgctgtttctcaggcaagcattgaattaatctatattttacgtggtcccatgtatgtaaacaaatttgtgtcta |
39573206 |
T |
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| Q |
216 |
cattttctaatcttcaacttttctttcatgtaggctctaattgaaatcccttataatcttgtccaagccgtggtttatgggattctagtttatgcaatga |
315 |
Q |
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| T |
39573205 |
cattttctaatcttcaacttttctttcatgtaggctctaattgaaatcccttataatcttgtccaagccgtggtttatgggattctagtttatgcaatga |
39573106 |
T |
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| Q |
316 |
ttggttatgagtggagcgtcactaaatttgtttggtacatctttttcatgtttttcaccttcctttactatacatactttggcatgatgacaatagcctt |
415 |
Q |
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| T |
39573105 |
ttggttatgagtggagcgtcactaaatttgtttggtacatctttttcatgtttttcaccttcctttactatacatactttggcatgatgacaatagcctt |
39573006 |
T |
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| Q |
416 |
gaccccaaacctagctatggcttctatactcaccagtgcgttcaattcattgttcaatctcttctcgggattcttaatcccccaaacagtaagttttagc |
515 |
Q |
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| T |
39573005 |
gaccccaaacctagctatggcttctatactcaccagtgcgttcaattcattgttcaatctcttctcgggattcttaatcccccaaacagtaagttttagc |
39572906 |
T |
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| Q |
516 |
ttcctttgatgttaactccacaaatttctactttagaaataataaattga |
565 |
Q |
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| T |
39572905 |
ttcctttgatgttaactccacaaatttctactttagaaataataaattga |
39572856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 243 - 428
Target Start/End: Complemental strand, 39587691 - 39587506
Alignment:
| Q |
243 |
atgtaggctctaattgaaatcccttataatcttgtccaagccgtggtttatgggattctagtttatgcaatgattggttatgagtggagcgtcactaaat |
342 |
Q |
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| T |
39587691 |
atgtaggctctaattgaaatcccttataatcttgttcaagctgtggtttatggaattattgtttatgcgatgattggttacgaatggagtgctaccaagt |
39587592 |
T |
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| Q |
343 |
ttgtttggtacatctttttcatgtttttcaccttcctttactatacatactttggcatgatgacaatagccttgaccccaaaccta |
428 |
Q |
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| T |
39587591 |
tcttttggtacatatttttcatgttcttcaacttcctctactttacctatcttggcatgatgacagcagccatgaccccaaaccta |
39587506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 239 - 426
Target Start/End: Complemental strand, 39620513 - 39620326
Alignment:
| Q |
239 |
tttcatgtaggctctaattgaaatcccttataatcttgtccaagccgtggtttatgggattctagtttatgcaatgattggttatgagtggagcgtcact |
338 |
Q |
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| T |
39620513 |
tttcatgcaggctctaatcgaaatttcgtatgttcttttacaagctttggtctatggaactatagtttatgcaatggttggttttgaatggagcgtgact |
39620414 |
T |
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| Q |
339 |
aaatttgtttggtacatctttttcatgtttttcaccttcctttactatacatactttggcatgatgacaatagccttgaccccaaacc |
426 |
Q |
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| T |
39620413 |
aaatttttctggtacatattttttgttttcttcacctccctatactgtacctactacggcatgatgacaatagctataaccccaaacc |
39620326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 39536686 - 39536621
Alignment:
| Q |
94 |
agtcttttatagggaaagggctgctggaatgtattcggcattggcatatgctgtttctcaggcaag |
159 |
Q |
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| T |
39536686 |
agtcttttatagagaaagagcggctggaatgtattcagctttgccgtatgcttttgctcaggcaag |
39536621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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