View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_13 (Length: 557)
Name: NF20094_low_13
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 20 - 547
Target Start/End: Complemental strand, 8691133 - 8690606
Alignment:
| Q |
20 |
gaacacaaccattatagaacacaagtgttttctttatcccaataacattgtcagtgcctctaaccttaatcttacggtcaagaccagtggctttccagta |
119 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8691133 |
gaacacaaccattatagaacacaagtgttttttttatcccaataacattgtcagtgcctctaaccttaatcttacggtcaagaccagtggctttccagta |
8691034 |
T |
|
| Q |
120 |
tccacactgtgtccttctgttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8691033 |
tccacactgtgtccttctgttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaa |
8690934 |
T |
|
| Q |
220 |
caagctgaaaaagatcaaaaacattagaaagattgcatttttgtgagaaaataatgatggggtttgttacctggtaaatcccaaggttcgaacttgcata |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8690933 |
caagctgaaaaagatcaaaaacattagaaagattgcatttttgtgagaaaataatgatggggtttgttacctggtaaatcccaaggttcgaacttgcata |
8690834 |
T |
|
| Q |
320 |
catcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggtttacaagctcttcatctgttggtcggaatct |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8690833 |
catcaacttcagctataacattgttgacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaatct |
8690734 |
T |
|
| Q |
420 |
gaatccaacaggaacgtcatagttatgaggaaatgagtttgtcattgcttgttttgttttgaaaatgtgttttgcnnnnnnngtagcaacaaaatgagac |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8690733 |
gaatccaacaggaacgtcatagttatgaggaaatgagtttgtcattgcttgttttgttttgaaaatgtgttttgctttttttgtagcaacaaaatgagac |
8690634 |
T |
|
| Q |
520 |
aaagagagactttctaataccacctatg |
547 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
8690633 |
aaagagagactttctaataccacctatg |
8690606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 139 - 434
Target Start/End: Complemental strand, 8705294 - 8704991
Alignment:
| Q |
139 |
ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa |
238 |
Q |
| |
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|||||||||||||| || || || || ||||| |||||| || ||||||||||| || |||| ||||||| | ||| |||||||||||||| ||| |
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| T |
8705294 |
ttaaaccttttactcttggcatacttataatcaataggacacaaaaaaaaccattctgggtcatctgattttacaaccgaaaaagctgaaaaagatgaaa |
8705195 |
T |
|
| Q |
239 |
aacattagaaagattgcatttttgtgagaaaataatgatggg---gtttgtt-----acctggtaaatcccaaggttcgaacttgcatacatcaacttca |
330 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||||||| ||| ||||||| ||||||||| ||||||||||| | |||||||||||||||||| |
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|
| T |
8705194 |
aacattaaaaaggttgcatttttatgagaaaataatgaagggtttgtttgtttttttacctggtaagtcccaaggttcatagttgcatacatcaacttca |
8705095 |
T |
|
| Q |
331 |
gctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacag |
430 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8705094 |
gctataacattgtttacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacag |
8704995 |
T |
|
| Q |
431 |
gaac |
434 |
Q |
| |
|
|||| |
|
|
| T |
8704994 |
gaac |
8704991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 139 - 363
Target Start/End: Complemental strand, 8740370 - 8740138
Alignment:
| Q |
139 |
ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa |
238 |
Q |
| |
|
|||||||||||||| ||||| || ||||| || |||||| |||||||||||||| | |||| |||||||||| |||| ||||||||||||| ||| |
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|
| T |
8740370 |
ttaaaccttttactctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattttatcactgaacgagctgaaaaagatgaaa |
8740271 |
T |
|
| Q |
239 |
aacattagaaagattgcatttttgtgagaaaataatgatggggtttgtt--------acctggtaaatcccaaggttcgaacttgcatacatcaacttca |
330 |
Q |
| |
|
||||||| ||| ||| ||| | | ||||||||||||| ||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
8740270 |
aacattaacaaggttgaattactttaagaaaataatgatagggtttgtttggtttttacctggtaagtcccaaggttcgtacttgcatacatcaacttca |
8740171 |
T |
|
| Q |
331 |
gctataacattgttgacaatggaatcattacca |
363 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
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|
| T |
8740170 |
gctataacattgtttacaatggaatcattacca |
8740138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 286 - 433
Target Start/End: Complemental strand, 8722216 - 8722069
Alignment:
| Q |
286 |
ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagt |
385 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |||| ||||| ||||||||| |||||||| |
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|
| T |
8722216 |
ttacctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgagatagt |
8722117 |
T |
|
| Q |
386 |
ggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaa |
433 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
8722116 |
agtttacaagctcttgatctgttggatggaatctgaatccaacaggaa |
8722069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 14372314 - 14372554
Alignment:
| Q |
20 |
gaacacaaccattatagaacacaagtgttttctttatcccaataacattgtcagtgcctctaaccttaatcttacggtcaagaccagtggctttccagta |
119 |
Q |
| |
|
|||||| |||||||||| | ||||| |||||||| |||||||||| ||| | | || |||||||||||||| ||||| ||||| |||||||| | |
|
|
| T |
14372314 |
gaacacgaccattatagtaaacaagagttttcttaatcccaataatattattgctacccctaaccttaatcttccggtcctttccagtagctttccaaaa |
14372413 |
T |
|
| Q |
120 |
tccacactgtgtccttctgttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaa |
219 |
Q |
| |
|
||| | ||| | || |||||||||||||| ||||| || |||||||| |||||| |||||||||||||| || |||| ||||||| || ||| |
|
|
| T |
14372414 |
accattttttgttgtccttttaaaccttttactctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgattttaccacggaa |
14372513 |
T |
|
| Q |
220 |
caagctgaaaaagatcaaaaacattagaaagattgcatttt |
260 |
Q |
| |
|
||||||||||||||| || ||||||| |||| ||||||||| |
|
|
| T |
14372514 |
caagctgaaaaagatgaagaacattaaaaaggttgcatttt |
14372554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 8723561 - 8723482
Alignment:
| Q |
286 |
ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaag |
365 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
8723561 |
ttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcattaccaag |
8723482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 291 - 433
Target Start/End: Complemental strand, 8738643 - 8738501
Alignment:
| Q |
291 |
tggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggttt |
390 |
Q |
| |
|
|||||| |||||||| || ||| |||| ||||||||||| ||||| |||||||| ||| |||| |||||||||||||| ||| ||||| || |
|
|
| T |
8738643 |
tggtaattcccaaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatgggaaacattaccaagtaacttgttcttgaggtagtgatta |
8738544 |
T |
|
| Q |
391 |
acaagctcttcatctgttggtcggaatctgaatccaacaggaa |
433 |
Q |
| |
|
|| || ||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
8738543 |
actagttcttcatttgttggtcggaatctgaatccgacaggaa |
8738501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 8738824 - 8738729
Alignment:
| Q |
138 |
gttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaaga |
233 |
Q |
| |
|
||||||| ||||||| |||||||| |||||||| | |||||| |||||||||||||| || |||| |||||||| | |||| |||||| ||||| |
|
|
| T |
8738824 |
gttaaactttttactctttgcgtacttgtaatcacaaggacacaagaaaaaccattccgggtcatgtgattttattatcgaacgagctgacaaaga |
8738729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 281
Target Start/End: Complemental strand, 8723729 - 8723586
Alignment:
| Q |
139 |
ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa |
238 |
Q |
| |
|
|||||||||||||| ||||| || ||||| || ||| || |||||||||||||| | |||| |||||||||| |||| |||||||||| | |||| |
|
|
| T |
8723729 |
ttaaaccttttactctttgcatacttgtattcaatagggcacaagaaaaaccattcttggtcatcagattttatcaccgaacgagctgaaaaacaacaaa |
8723630 |
T |
|
| Q |
239 |
aaca-ttagaaagattgcatttttgtgagaaaataatgatgggg |
281 |
Q |
| |
|
|||| | | ||| || |||||||||| ||||||||||||||| |
|
|
| T |
8723629 |
aacagtaataaaaatcacatttttgtgccaaaataatgatgggg |
8723586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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