View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_17 (Length: 522)
Name: NF20094_low_17
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 9 - 504
Target Start/End: Complemental strand, 1715764 - 1715277
Alignment:
| Q |
9 |
gaagaatatgagcaaacataaggatggaaaattttgatgaaaaaccaaagtatgagttacaatcttgtgttatgaccagtctgtttattccagtttcaaa |
108 |
Q |
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| T |
1715764 |
gaagaaaatgagcaaacataaggatggaaaattttgatgaaaaaccaaagtatgagttacaatcttgtgttatgaccagtctgtttattccagtttcaaa |
1715665 |
T |
|
| Q |
109 |
gatcttttaagaatgcttccataacattaacaaagaacctagatataattgttacttctaatgttctcatacagacacaaacacacaaacaatataatat |
208 |
Q |
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| T |
1715664 |
gatcttttaagaatgcttccataacattaacaaagaacctagatataattgttacttctaatgttctcatacagacacaaaca--------atataatat |
1715573 |
T |
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| Q |
209 |
cattacttcatattatgtttcattcctttatgtcattcagtttcgttcatcaaatgttaaatgtccataggagattccgtaaacacatgaatgcatgtat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1715572 |
cattacttcatattatgtttcattcctttatgtcattcagtttcgttcatcaaatgttaaatgtccataggagattccgtaaacacatgaatgcatgtat |
1715473 |
T |
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| Q |
309 |
atatcgtatatatctatggctacatccacaagtgtacctattgtaacaagtgcataaaaatgtagctctttgctatttctagattgttaatttttacacc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1715472 |
atatcgtatatatctatggctacatccacaagtgtacctattgtaacaagtgcataaaaatgtagctctttgctatttctagattgttaatttttacacc |
1715373 |
T |
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| Q |
409 |
ttagctccaatcataaaaactgtttgaaatgacagtgttgtgtgataattactccctattatttctttctacatatcacaatgatagtgtgtaatt |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1715372 |
ttagctccaatcataaaaactgtttgaaatgacagtgttgtgtgataattactccctattatttctttctacatatcacaatgatagtgtgtaatt |
1715277 |
T |
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