View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_19 (Length: 486)
Name: NF20094_low_19
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 14 - 467
Target Start/End: Complemental strand, 46898133 - 46897680
Alignment:
| Q |
14 |
cagagagcggtcgttggagagtgatgaagttatcattacaaactattcctcatcaatgtttagatttgatgggcgatgagagacgttactattatcaagg |
113 |
Q |
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| T |
46898133 |
cagagagcggtcgttggaaagtgatgaagttatcgttacaaactattcctcatcaatgtttagatttgatgggcgatgagagacgttactattgtcaagg |
46898034 |
T |
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| Q |
114 |
ccttacgaattagggaggatcaaaggttgtggtttagttccatatggtagatcatttgaggagcgggacttgagataatgacgaattataggccttgggt |
213 |
Q |
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| T |
46898033 |
ccttacgaattagggaggatcaaaggttgtggtttagttccatatggtagatcatttgagaagcggggcttgagataatgacgaattataggccttgggt |
46897934 |
T |
|
| Q |
214 |
cagtccaaaatatcttacttttgaagaattgtagagacaaatatatcgaggtaacttcaannnnnnnaaagaaccaatcgcttctctaacatatattttt |
313 |
Q |
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| T |
46897933 |
cagtccaaaatatcctacttttgaagaattgtagagacaaatatatcgaggtaacttcaatttttttaaagaactaatcgcttctctaacatatattttt |
46897834 |
T |
|
| Q |
314 |
tatttgcatggccaaaattgatgagatagtgtgtagttgactgaattagaggaataaaataattgacattagtacgtattgtacgggttaaacatcgatc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46897833 |
tatttgcatggccaaaattgatgagatagtgtgtagttgactgaattagaggaataaaataattgacattagtacgtattgtacgggttaaacatcgatc |
46897734 |
T |
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| Q |
414 |
acctgagcaattaaacaagaaaaactatttgaattggtgaagctgcctttactt |
467 |
Q |
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| T |
46897733 |
acctgagcaattaaacaagaaaaactatttgaattggtgaagctgcctttactt |
46897680 |
T |
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