View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_21 (Length: 472)
Name: NF20094_low_21
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 41659061 - 41659466
Alignment:
| Q |
1 |
aatttgagaacttggaataagagcaagtactgaagtac-gtaggactat---attatgagaatgagatagtaagaaatgattttcccttgagttataatc |
96 |
Q |
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| T |
41659061 |
aatttgagaacttggaataagagcaagcactgaagtaccgtaggactattatattatgagaatgagatagtaagaaattattttcccttgagttataatc |
41659160 |
T |
|
| Q |
97 |
aatgtaacatcaaatcaattatttatactactacatcgatgatcatagtaaaataagctagtccaaatgtaggggtggtaacaactaactaattataatt |
196 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41659161 |
aatgta-catcaaatcaattatttatactactacatcgatgatcatagtaaaataagctagtccaaatgtaggggtggtaacaactaactaattataatt |
41659259 |
T |
|
| Q |
197 |
aactaactccccttaggatccgggagctacaaattgccgtacaacgtcaattaatgtcgtggagtatagttgtcttttaaaattgtttcactcactgaag |
296 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41659260 |
aactaactccccataggatccgggagctacaaattgccgtacaacgtc----aatgtcgtggag--tagttgtcttttaaaattgtttcactcactgaag |
41659353 |
T |
|
| Q |
297 |
acatttaagccagaccaagggttgttaaagattggtcttgagatgcattgcttgcgtgttatgtgagagaaatcagcatgaaattaaagcaaactataat |
396 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41659354 |
acatttaagacagaccaagggttgttaaagattggtcttgagatgcattgcttgcatgttatgtgagagaaatcagcatgaaattaacgcaaactataat |
41659453 |
T |
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| Q |
397 |
atagggctttttt |
409 |
Q |
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| T |
41659454 |
atagggctttttt |
41659466 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 15677854 - 15677813
Alignment:
| Q |
54 |
gagaatgagatagtaagaaatgattttcccttgagttataat |
95 |
Q |
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| T |
15677854 |
gagaatgagatagtaagaaatgatttttccttgagttgtaat |
15677813 |
T |
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