View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_22 (Length: 460)
Name: NF20094_low_22
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 259 - 421
Target Start/End: Original strand, 1541327 - 1541490
Alignment:
| Q |
259 |
agtacatgtacacctttttacgatagctaggtggaacctatatttgtaacttctatattctactgaataatttttacag-ccatgaaacaaacaccgcct |
357 |
Q |
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| T |
1541327 |
agtacatgtacacctttttacgatagctaggtggaacctatatttgtaacttctatattctagtgaataatttttacaaaccatgaaacaaacaccgcct |
1541426 |
T |
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| Q |
358 |
tacggtatcgtattcctacccagcatgttatctcatctcaatcatcaacggaagaacatagctc |
421 |
Q |
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| T |
1541427 |
tactgtatcgtattgctacccagcatgttatctcatctcaatcatcaacggaagaacatagctc |
1541490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 1541133 - 1541242
Alignment:
| Q |
52 |
ggaggagtagaaacgcatcttacgttagtattcaccaaataggaaactctagagagagagtgtacgcatcttacttactattccaaatttcacacactac |
151 |
Q |
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| T |
1541133 |
ggaggagtagaaacgcatcttatgttagtattcaccaaataggaaactctagag----agtgtacgcatcttacttactattccaaatttcacacactac |
1541228 |
T |
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| Q |
152 |
tcacgtttgtatat |
165 |
Q |
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| T |
1541229 |
tcacgtttgtatat |
1541242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 198 - 261
Target Start/End: Original strand, 1541240 - 1541303
Alignment:
| Q |
198 |
tatcaatgtgaacatggttagtttcatgttgctttccaacacaagttttcattctttatggagt |
261 |
Q |
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| T |
1541240 |
tatcaatgtgaacatggttagtttcatgttgctttccaacacaagttttcattctttatggagt |
1541303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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