View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_30 (Length: 408)
Name: NF20094_low_30
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 31 - 398
Target Start/End: Complemental strand, 17646444 - 17646077
Alignment:
| Q |
31 |
tatgtgtattgtaagaaattaataacccatgttcacgattagtttgttttcctaccttgctatcttcaagccataagataagaaatcacactttctctcc |
130 |
Q |
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| T |
17646444 |
tatgtgtattgtatgaaattaataacccatgttcacgattagtttgttttcctaccttgctatcttcaagccataagataagaaatcacactctctcccc |
17646345 |
T |
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| Q |
131 |
ttaagcattattcaggaaactaaaacctatcactaagaaaactgcaagaaacaagggttctaagcttaaaatgacaagataaaactatcaaggtgtgcaa |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17646344 |
ttaagcattattcaggaaactaaaacctatcactaagaaaactgcaagaaacaagggttctaagcttaaaatgacaagataaaactatcaaggtgtgcaa |
17646245 |
T |
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| Q |
231 |
tactttctctaatgttgttacttctgatatttcttcttcataattctgcattagaatggtaagttttaccaatctagagaaataatctgcaaatttttca |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17646244 |
tactttctctaatgttgttacttctgatatttcttcttcataattctgctttagaatggtaagttttaccaatctagagaaataatctgcaaatttttca |
17646145 |
T |
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| Q |
331 |
caattcttcctttacatcgacccacactatctcttcaaggcatgaagcttcactttcttgacctttgc |
398 |
Q |
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| T |
17646144 |
caattcttcctttacatcgacccacactatctcttcaaggcatgaagcttcactttcttgacctttgc |
17646077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 32091705 - 32091607
Alignment:
| Q |
31 |
tatgtgtattgtaagaaattaataacccatgttcacgattagtttgttttcctaccttgctatcttcaagccataagataagaaatcacactttctctcc |
130 |
Q |
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|||||||||||||||| | |||||||| ||||| || || |||| |||| ||| ||| |||||||| |||||| ||| || |||||||||||||||||| |
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| T |
32091705 |
tatgtgtattgtaagatactaataacc-atgtttacagtttgtttctttttctaactttctatcttctagccatgagagaacaaatcacactttctctcc |
32091607 |
T |
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