View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_32 (Length: 392)
Name: NF20094_low_32
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 378
Target Start/End: Complemental strand, 50401337 - 50400970
Alignment:
| Q |
11 |
agaatatattataggtatgaaaccactccttgcacgatatttttgtctgcttgatgaggcagaaaataatagatatactagattcctgaaaaatcattgc |
110 |
Q |
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| T |
50401337 |
agaatatattataggtatgaaaccactccttgcacgatatttttgtctgcttgatgaggcagaaaataatagatatactagattcctgaaaaatcattgc |
50401238 |
T |
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| Q |
111 |
ttacacaattttcttagcctgctaaatgctaatagtgtttgtctttttcagtccagacgcccgtgagcatatatatttctttcaccgacatgatattaca |
210 |
Q |
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| T |
50401237 |
ttacacaatttccttagcctgctaaatgctaatagtgtttgtctttttcattccagacgcccgtgagcatatatatttctttcaccgacatgatattaca |
50401138 |
T |
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| Q |
211 |
cactttgtgtccaacgtcactggtatttactcataaatggaaaatggatttagcatatagcaaagcaagtgcggtagggtagattttgaggtaaaattgt |
310 |
Q |
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| T |
50401137 |
cactttgtgtccaacgtcactggtatttactcataaatggaaaatggatttagcatatagcaaagcaagtgcggtagggtagattttgaggtaaaattgt |
50401038 |
T |
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| Q |
311 |
gaacatgacagtgatatttaatcccagattggaatatgtaatcctaagtttgagttataagaaaaatt |
378 |
Q |
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| T |
50401037 |
gaacatgacagtgatatttaatcccagattggaatatgtaatcctaagtttgagttataagaaaaatt |
50400970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 29486427 - 29486333
Alignment:
| Q |
181 |
atatatttctttcaccgacatgatattaca------cactttgtgtccaacgtcactggtatttactcat-aaatggaaaatggatttagcatat |
268 |
Q |
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| T |
29486427 |
atatatttctttcaccgacatggtattacagttacacactttgtgtccaacgtcactcgtatttactcataaaatggaaagtgggtttagtatat |
29486333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 29486483 - 29486431
Alignment:
| Q |
100 |
aaaatcattgcttacacaattttcttagcctgctaaatgctaatagtgtttgt |
152 |
Q |
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| T |
29486483 |
aaaatcattgcttacacaattttcttagtatgttaaatgctaatgttgtttgt |
29486431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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