View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_33 (Length: 391)
Name: NF20094_low_33
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 14 - 326
Target Start/End: Original strand, 47018575 - 47018888
Alignment:
| Q |
14 |
caaaggaagaactataaaacaatcaagtcaaccgcacaacttttcgtttatggattgtgttctagcttacccactaacattt-gtcaaatgtatctccta |
112 |
Q |
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| T |
47018575 |
caaaggaagaactataaaacaatcaagtcaaccgcacaacttttcgtttatggattgtgttctagcttacccactaacattttgtcaaatgtatctccta |
47018674 |
T |
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| Q |
113 |
cggttggtttccaccttttattatttgctcatgcagtcgtgaaaatgaaaatgtatttgaagaaataagtttgatcccaattttgtatttttggggttca |
212 |
Q |
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| T |
47018675 |
cggttggtttccaccttttattatttgctcatgcagtcgtgaaaatgaaaatgtatttgaagaaataagtttgatcccaattttgtatttttggggttca |
47018774 |
T |
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| Q |
213 |
ttgatggttcaaataagtttgaaataataactctcaaatctaatgagttcataatgttatgcagtgagttgaaaatgtttcgctggtgagatcaacatgt |
312 |
Q |
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| T |
47018775 |
ttgatggttcaaataagtttgaagtaataattctcaaatctaatgagttcataatgttatgcagtgagttgaaaatgtttcgctggtgagatcaacatgt |
47018874 |
T |
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| Q |
313 |
tttctgaattctaa |
326 |
Q |
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| T |
47018875 |
ttcctgaagtctaa |
47018888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 47018936 - 47018996
Alignment:
| Q |
319 |
aattctaactgatttgtattgggaattgagatcaatgtgagataaattcattaattagttc |
379 |
Q |
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| T |
47018936 |
aattctaactgatttgtattgggaattgagatcaatgtgagataaattcattaattagttc |
47018996 |
T |
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