View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20094_low_36 (Length: 377)

Name: NF20094_low_36
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20094_low_36
NF20094_low_36
[»] chr3 (36 HSPs)
chr3 (159-362)||(51005028-51005231)
chr3 (159-362)||(10305206-10305410)
chr3 (160-362)||(4251444-4251648)
chr3 (70-155)||(28690762-28690847)
chr3 (69-151)||(14194609-14194691)
chr3 (69-151)||(30190639-30190721)
chr3 (69-149)||(8679033-8679113)
chr3 (69-149)||(43253842-43253922)
chr3 (69-132)||(33491062-33491125)
chr3 (78-149)||(37695654-37695725)
chr3 (69-151)||(49830183-49830266)
chr3 (69-149)||(31158501-31158580)
chr3 (69-149)||(37312006-37312086)
chr3 (72-151)||(24569082-24569161)
chr3 (68-151)||(37772942-37773025)
chr3 (69-159)||(29023945-29024035)
chr3 (69-149)||(1778698-1778778)
chr3 (69-133)||(10366621-10366685)
chr3 (69-133)||(27471407-27471471)
chr3 (69-152)||(19609352-19609435)
chr3 (70-151)||(5322919-5322998)
chr3 (71-149)||(11632137-11632214)
chr3 (71-149)||(30711129-30711207)
chr3 (71-149)||(34750552-34750630)
chr3 (90-152)||(54477459-54477521)
chr3 (70-151)||(36476638-36476719)
chr3 (98-151)||(51837967-51838020)
chr3 (69-149)||(37497548-37497628)
chr3 (69-133)||(38795416-38795480)
chr3 (69-149)||(45710906-45710986)
chr3 (70-149)||(19823067-19823146)
chr3 (69-152)||(36460395-36460478)
chr3 (69-151)||(44301616-44301698)
chr3 (78-151)||(12736560-12736633)
chr3 (82-155)||(54726535-54726608)
chr3 (92-152)||(52206849-52206909)
[»] chr5 (31 HSPs)
chr5 (169-362)||(4246276-4246469)
chr5 (69-151)||(1248581-1248663)
chr5 (70-149)||(8724987-8725066)
chr5 (69-159)||(27542840-27542931)
chr5 (71-155)||(37184058-37184142)
chr5 (69-153)||(31655105-31655189)
chr5 (70-133)||(8698381-8698444)
chr5 (69-151)||(32440195-32440277)
chr5 (69-149)||(4818607-4818687)
chr5 (69-133)||(29570464-29570528)
chr5 (97-151)||(27580654-27580708)
chr5 (69-149)||(9515802-9515882)
chr5 (69-133)||(38508164-38508228)
chr5 (69-149)||(40530201-40530281)
chr5 (70-133)||(843509-843572)
chr5 (72-151)||(15439299-15439378)
chr5 (82-159)||(30512675-30512753)
chr5 (82-159)||(30553015-30553093)
chr5 (69-133)||(2232050-2232114)
chr5 (69-133)||(15818457-15818521)
chr5 (78-133)||(6615866-6615921)
chr5 (98-149)||(6754085-6754135)
chr5 (98-149)||(29374398-29374449)
chr5 (69-151)||(7827903-7827985)
chr5 (69-151)||(11904260-11904342)
chr5 (89-151)||(18841533-18841595)
chr5 (71-149)||(40899974-40900052)
chr5 (72-133)||(41496152-41496213)
chr5 (102-134)||(22848394-22848426)
chr5 (73-153)||(41478879-41478959)
chr5 (73-153)||(41492354-41492434)
[»] chr2 (27 HSPs)
chr2 (163-356)||(13761283-13761476)
chr2 (70-153)||(16805933-16806016)
chr2 (70-153)||(16845214-16845297)
chr2 (69-151)||(16377633-16377715)
chr2 (69-151)||(19937731-19937813)
chr2 (69-149)||(45235637-45235717)
chr2 (69-159)||(39691535-39691626)
chr2 (69-152)||(17695383-17695466)
chr2 (69-133)||(3323263-3323327)
chr2 (69-153)||(14523349-14523433)
chr2 (69-149)||(16463745-16463825)
chr2 (69-149)||(31448670-31448750)
chr2 (69-129)||(39443789-39443849)
chr2 (78-153)||(43410478-43410553)
chr2 (71-133)||(5789627-5789689)
chr2 (70-132)||(26607946-26608008)
chr2 (69-151)||(43115779-43115861)
chr2 (98-153)||(1206709-1206764)
chr2 (82-149)||(32783420-32783487)
chr2 (82-133)||(35313959-35314010)
chr2 (69-151)||(37322482-37322565)
chr2 (69-123)||(18853177-18853231)
chr2 (98-151)||(43699605-43699658)
chr2 (92-152)||(17346363-17346422)
chr2 (69-133)||(27501515-27501579)
chr2 (69-133)||(36794356-36794420)
chr2 (69-133)||(39785660-39785724)
[»] chr4 (45 HSPs)
chr4 (160-355)||(1814193-1814390)
chr4 (69-152)||(42616888-42616971)
chr4 (69-151)||(38405087-38405169)
chr4 (70-150)||(20598168-20598248)
chr4 (68-151)||(28500875-28500958)
chr4 (69-155)||(7061649-7061735)
chr4 (68-149)||(46396867-46396948)
chr4 (69-149)||(34360711-34360791)
chr4 (69-149)||(47464350-47464430)
chr4 (69-153)||(52247413-52247497)
chr4 (69-153)||(54506840-54506924)
chr4 (69-132)||(4972633-4972696)
chr4 (69-159)||(11288615-11288705)
chr4 (69-151)||(36985840-36985922)
chr4 (69-151)||(49428327-49428409)
chr4 (78-155)||(6643654-6643731)
chr4 (69-134)||(35311208-35311273)
chr4 (98-151)||(42517652-42517705)
chr4 (69-153)||(16821316-16821400)
chr4 (69-149)||(51625139-51625219)
chr4 (70-159)||(2653465-2653553)
chr4 (70-153)||(41711442-41711525)
chr4 (71-153)||(462010-462092)
chr4 (69-151)||(52869126-52869208)
chr4 (69-150)||(39397399-39397480)
chr4 (69-149)||(3689618-3689698)
chr4 (79-151)||(8175575-8175647)
chr4 (69-133)||(32884873-32884937)
chr4 (69-149)||(40122839-40122919)
chr4 (69-149)||(43237299-43237379)
chr4 (92-159)||(2942653-2942720)
chr4 (89-152)||(53412161-53412224)
chr4 (93-155)||(3098768-3098830)
chr4 (69-119)||(3669965-3670015)
chr4 (69-151)||(5841412-5841494)
chr4 (78-152)||(30192258-30192332)
chr4 (69-151)||(49175919-49176001)
chr4 (70-119)||(13016404-13016453)
chr4 (69-153)||(5618594-5618678)
chr4 (69-133)||(16411352-16411416)
chr4 (69-149)||(17114496-17114576)
chr4 (69-109)||(22130143-22130183)
chr4 (69-153)||(30682181-30682265)
chr4 (93-133)||(31257521-31257561)
chr4 (69-149)||(53346815-53346895)
[»] chr6 (16 HSPs)
chr6 (14-159)||(7920284-7920429)
chr6 (69-152)||(1225100-1225183)
chr6 (89-159)||(21804527-21804597)
chr6 (69-149)||(31894188-31894268)
chr6 (69-132)||(3720219-3720282)
chr6 (78-149)||(27367423-27367494)
chr6 (78-149)||(27457770-27457841)
chr6 (103-152)||(4590610-4590659)
chr6 (78-151)||(13909478-13909551)
chr6 (90-155)||(17828990-17829055)
chr6 (69-149)||(1781858-1781938)
chr6 (69-149)||(6801987-6802067)
chr6 (101-149)||(13087586-13087634)
chr6 (69-149)||(32440623-32440703)
chr6 (69-151)||(15058171-15058253)
chr6 (69-133)||(11655924-11655988)
[»] scaffold0024 (1 HSPs)
scaffold0024 (160-362)||(142817-143011)
[»] chr8 (29 HSPs)
chr8 (69-149)||(39300921-39301001)
chr8 (69-149)||(1875572-1875652)
chr8 (90-152)||(12559646-12559708)
chr8 (79-149)||(40109790-40109860)
chr8 (78-159)||(41092039-41092121)
chr8 (69-151)||(32476341-32476423)
chr8 (69-155)||(39405812-39405898)
chr8 (69-133)||(21216081-21216145)
chr8 (71-147)||(33765718-33765794)
chr8 (69-133)||(34948667-34948731)
chr8 (69-149)||(36967417-36967497)
chr8 (69-149)||(39482671-39482751)
chr8 (71-151)||(42972490-42972570)
chr8 (69-149)||(44648513-44648592)
chr8 (92-151)||(7703159-7703218)
chr8 (98-153)||(40028568-40028623)
chr8 (92-131)||(45034541-45034580)
chr8 (92-149)||(7172970-7173027)
chr8 (69-133)||(6611769-6611833)
chr8 (69-153)||(17719238-17719322)
chr8 (97-149)||(44761502-44761554)
chr8 (91-149)||(5053155-5053213)
chr8 (79-149)||(39890677-39890747)
chr8 (101-151)||(42887054-42887104)
chr8 (92-153)||(396614-396675)
chr8 (71-132)||(39329370-39329430)
chr8 (73-133)||(1739712-1739772)
chr8 (72-152)||(27294042-27294122)
chr8 (69-149)||(45425646-45425726)
[»] chr7 (35 HSPs)
chr7 (68-159)||(30866019-30866111)
chr7 (70-155)||(34100534-34100619)
chr7 (69-153)||(22738760-22738844)
chr7 (69-149)||(34947563-34947643)
chr7 (69-134)||(26974107-26974172)
chr7 (69-151)||(7463274-7463356)
chr7 (70-159)||(32346039-32346129)
chr7 (68-133)||(8592425-8592490)
chr7 (71-159)||(32018700-32018789)
chr7 (69-133)||(16904458-16904522)
chr7 (69-133)||(28103812-28103876)
chr7 (69-149)||(29835400-29835480)
chr7 (69-149)||(43873986-43874066)
chr7 (78-133)||(7457416-7457471)
chr7 (69-151)||(2850867-2850949)
chr7 (71-133)||(12631384-12631446)
chr7 (69-133)||(2459548-2459612)
chr7 (69-133)||(5524459-5524523)
chr7 (69-149)||(9786051-9786131)
chr7 (69-149)||(11373414-11373494)
chr7 (69-149)||(24516275-24516355)
chr7 (69-149)||(40076378-40076458)
chr7 (69-149)||(42935724-42935804)
chr7 (71-153)||(13962018-13962100)
chr7 (89-134)||(19060407-19060452)
chr7 (92-133)||(33819293-33819334)
chr7 (72-149)||(41506054-41506131)
chr7 (69-149)||(83448-83528)
chr7 (92-144)||(17828360-17828412)
chr7 (79-123)||(19271729-19271773)
chr7 (69-149)||(21390358-21390438)
chr7 (69-149)||(23670549-23670628)
chr7 (89-159)||(32018921-32018993)
chr7 (69-149)||(44180268-44180348)
chr7 (69-133)||(44424214-44424278)
[»] chr1 (37 HSPs)
chr1 (69-153)||(26093446-26093530)
chr1 (69-151)||(917078-917160)
chr1 (71-149)||(28749047-28749125)
chr1 (69-159)||(39864156-39864247)
chr1 (69-147)||(12039140-12039218)
chr1 (70-151)||(34031510-34031591)
chr1 (89-150)||(36701976-36702037)
chr1 (89-150)||(36718080-36718141)
chr1 (69-149)||(9307683-9307763)
chr1 (70-134)||(11449954-11450018)
chr1 (69-153)||(30754923-30755007)
chr1 (69-152)||(6267838-6267921)
chr1 (77-159)||(7759260-7759343)
chr1 (98-152)||(8896343-8896397)
chr1 (69-151)||(16395029-16395111)
chr1 (97-151)||(24880930-24880984)
chr1 (71-133)||(31042869-31042931)
chr1 (69-151)||(33733245-33733326)
chr1 (82-148)||(42410051-42410117)
chr1 (69-134)||(24991635-24991700)
chr1 (90-151)||(26257943-26258004)
chr1 (71-148)||(27687298-27687375)
chr1 (90-155)||(41080648-41080713)
chr1 (69-149)||(23168975-23169055)
chr1 (69-148)||(2572525-2572604)
chr1 (69-148)||(5179381-5179460)
chr1 (69-159)||(6160441-6160532)
chr1 (82-149)||(22181392-22181459)
chr1 (69-148)||(31978634-31978713)
chr1 (69-130)||(3260661-3260723)
chr1 (69-151)||(43614451-43614533)
chr1 (93-155)||(44761537-44761599)
chr1 (97-134)||(20564076-20564113)
chr1 (98-151)||(32970578-32970631)
chr1 (78-123)||(35682796-35682841)
chr1 (69-149)||(40144829-40144909)
chr1 (69-149)||(49223968-49224048)
[»] scaffold0018 (1 HSPs)
scaffold0018 (69-149)||(136016-136096)
[»] scaffold0302 (1 HSPs)
scaffold0302 (70-149)||(16154-16233)
[»] scaffold0095 (1 HSPs)
scaffold0095 (69-155)||(50254-50340)
[»] scaffold0159 (1 HSPs)
scaffold0159 (71-133)||(34000-34062)
[»] scaffold0012 (1 HSPs)
scaffold0012 (68-149)||(105740-105821)
[»] scaffold0470 (1 HSPs)
scaffold0470 (69-133)||(1057-1121)
[»] scaffold0330 (1 HSPs)
scaffold0330 (69-153)||(5442-5526)
[»] scaffold0328 (1 HSPs)
scaffold0328 (82-134)||(7973-8025)
[»] scaffold0294 (1 HSPs)
scaffold0294 (69-133)||(17107-17171)
[»] scaffold1809 (1 HSPs)
scaffold1809 (103-149)||(697-743)
[»] scaffold0464 (1 HSPs)
scaffold0464 (69-118)||(6264-6313)
[»] scaffold0003 (1 HSPs)
scaffold0003 (92-133)||(252531-252572)
[»] scaffold0583 (1 HSPs)
scaffold0583 (69-149)||(2081-2161)
[»] scaffold0110 (1 HSPs)
scaffold0110 (69-133)||(1776-1840)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 6e-90; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 159 - 362
Target Start/End: Original strand, 51005028 - 51005231
Alignment:
Q  159 agggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctcta 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51005028 agggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagcttttgccattttccatttcacagttattactctcta 51005127  T
Q  259 ccnnnnnnnnccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactgtatgctcagaaaaagacaataagcaaagac 358  Q
    ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  51005128 ccttttttttccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactatatgctcagaaaaagacaataagcaaaggc 51005227  T
Q  359 aact 362  Q
    ||||    
T  51005228 aact 51005231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 159 - 362
Target Start/End: Original strand, 10305206 - 10305410
Alignment:
Q  159 agggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctcta 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10305206 agggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctcta 10305305  T
Q  259 cc-nnnnnnnnccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactgtatgctcagaaaaagacaataagcaaaga 357  Q
    ||         |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  10305306 cctttttttttccactcaaaacttggtcaccaactacatatgaagacacatgaaggcagaagcaaacactgtatgctcagaaaaagacaataagcaaagg 10305405  T
Q  358 caact 362  Q
    |||||    
T  10305406 caact 10305410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 160 - 362
Target Start/End: Complemental strand, 4251648 - 4251444
Alignment:
Q  160 gggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctctac 259  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4251648 gggctatgttatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctctac 4251549  T
Q  260 c--nnnnnnnnccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactgtatgctcagaaaaagacaataagcaaaga 357  Q
    |          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  4251548 cttttttttttccactcaaaacttggtcaccaactacatatgaagacacatgaaggttgaagcaaacactgtatgctcagaaaaagacaataagcaaagg 4251449  T
Q  358 caact 362  Q
    |||||    
T  4251448 caact 4251444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 28690762 - 28690847
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatctt 155  Q
    ||||||| |||||||||| || |||||||||||||||||| ||||||||||||  |||||||||| | ||||||||||||||||||    
T  28690762 gtttaaggtttgtgcacgattattaaagaaatgattaattgtgttgatttcaacggtaaaattaatatcatttactaaaatatctt 28690847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 14194691 - 14194609
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||| |||||||||| |||||||||||||||| |||| |||||||||||||  ||||||||  ||||||||||||||||    
T  14194691 cgtttaaggtttgtgcacgatttttaaagaaatgatcaattgtgttgatttcaatgataaaattagtaccatttactaaaata 14194609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 30190639 - 30190721
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||| ||||||||||||| | || ||||||||||||| ||||||||||||| |||||||||  | ||||||||||||||    
T  30190639 cgtttaaggtttgtgcacggttatgaaggaaatgattaattgtgttgatttcaatggtaaaattagtatcatttactaaaata 30190721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 8679033 - 8679113
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||||||| |||||| || |||| ||||||||||||| ||||||||||||| |||||||||  | ||||||||||||    
T  8679033 cgtttaagatttatgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaa 8679113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 43253842 - 43253922
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| |||||||||| || |||| ||||||||||||| ||||||||||||| |||||||||  | ||||||||||||    
T  43253842 cgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaa 43253922  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 33491062 - 33491125
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatt 132  Q
    |||||||| |||||||||| || |||| ||||||||||||| ||||||||||||||||||||||    
T  33491062 cgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaatagtaaaatt 33491125  T

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Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 37695654 - 37695725
Alignment:
Q  78 tttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||||| || |||| ||||||||||||| ||||||||||||| |||||||||| | ||||||||||||    
T  37695654 tttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattaatatcatttactaaaa 37695725  T

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Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 49830266 - 49830183
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaa-tgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||  |||||||||| || ||||| ||| ||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  49830266 cgtttaacgtttgtgcacgattattaaaaaaaatgattaattgtgttgatttcaatagtaaaattaatatcatttactaaaata 49830183  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 31158501 - 31158580
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| |||||||||| || ||||| |||||||||||| || ||||||| ||||||||||||| | ||||||||||||    
T  31158501 cgtttaaggtttgtgcacgattattaaa-aaatgattaattgtgctgatttcgatagtaaaattaataacatttactaaaa 31158580  T

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Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 37312086 - 37312006
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||| |||||| || |||| ||||||||||||| ||||||||||||| |||||||||  | ||||||||||||    
T  37312086 cgtttaaggtttatgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaa 37312006  T

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Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 24569082 - 24569161
Alignment:
Q  72 ttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    ||||||||| |||||| || ||||  |||||||||||| ||||||||||||| |||||||||| |  |||||||||||||    
T  24569082 ttaagatttatgcacgattattaagaaaatgattaattgtgttgatttcaatggtaaaattaatattatttactaaaata 24569161  T

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Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 37772942 - 37773025
Alignment:
Q  68 ccgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    ||||||||| |||||||| | || |||| ||||||||||||| | |||||| |||| |||||||||| | ||||||||||||||    
T  37772942 ccgtttaaggtttgtgcatgattattaaggaaatgattaattgtattgattacaatggtaaaattaatatcatttactaaaata 37773025  T

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Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 29023945 - 29024035
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatcttatta 159  Q
    |||||||| ||| |||||| || ||||| |||||||||||| |||||||||  || |||||||||  | |||||||||||| |||||||||    
T  29023945 cgtttaaggtttatgcacgattattaaaaaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacatcttatta 29024035  T

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Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 1778778 - 1778698
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| |||||||| | || |||| ||||||||||||| |||||||||||||  |||||||||   ||||||||||||    
T  1778778 cgtttaaggtttgtgcatgattattaaggaaatgattaattgtgttgatttcaatgataaaattaatgacatttactaaaa 1778698  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 10366621 - 10366685
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||| |||||||||| || ||||  |||||||||||| ||||||||||||| |||||||||    
T  10366621 cgtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgatttcaatggtaaaatta 10366685  T

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Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 27471471 - 27471407
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    ||||||||||||||||||| || ||||  |||||||||||| ||||||||||||| || ||||||    
T  27471471 cgtttaagatttgtgcacgattattaagaaaatgattaattatgttgatttcaatggtgaaatta 27471407  T

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Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 19609435 - 19609352
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatat 152  Q
    ||||||||||||||| | |  ||||||  ||||||||| || ||||||||||||| |||||||||| | ||||||| |||||||    
T  19609435 cgtttaagatttgtgtatgaattttaagaaaatgattatttgtgttgatttcaatcgtaaaattaatatcatttacaaaaatat 19609352  T

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Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 5322919 - 5322998
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    ||||||| |||||||||| || |||||  ||||||||||| ||||||||||| |  ||||||||| | ||||||||||||||    
T  5322919 gtttaaggtttgtgcacgattattaaa--aatgattaattatgttgatttcagtgataaaattaatatcatttactaaaata 5322998  T

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Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 11632214 - 11632137
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||||||||||||| || ||||| |||||||||||| ||||||||||||  |||||||||  |  |||||||||||    
T  11632214 tttaagatttgtgcacgattattaaa-aaatgattaattgtgttgatttcaacggtaaaattagtagtatttactaaaa 11632137  T

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Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 30711207 - 30711129
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||| ||||||||  ||| |||||||||| ||||||| ||||||||| |||  ||||||||| | ||||||||||||    
T  30711207 tttaaggtttgtgcattgttattaaagaaataattaattatgttgattttaatgataaaattaatatcatttactaaaa 30711129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 34750630 - 34750552
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||| |||||||||| ||||| | ||||||||| ||| ||||||||| ||| |||||||||  | ||||||||||||    
T  34750630 tttaaggtttgtgcacgatttttgatgaaatgattgattgtgttgattttaatggtaaaattagtatcatttactaaaa 34750552  T

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Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 54477459 - 54477521
Alignment:
Q  90 ttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatat 152  Q
    |||| |||||||| |||||| ||||||||| ||| |||||||||| | |||||||||||||||    
T  54477459 tttttaagaaatggttaattgtgttgattttaatggtaaaattaatatcatttactaaaatat 54477521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 36476719 - 36476638
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    ||||||| ||||| ||||||| ||||  |||| ||| ||| |||||||| |||| |||||||||| | ||||||||||||||    
T  36476719 gtttaaggtttgttcacggttattaagaaaataattgattgtgttgattgcaatggtaaaattaatatcatttactaaaata 36476638  T

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Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 51837967 - 51838020
Alignment:
Q  98 aaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||||||| |||||||||||||  ||||||||| | ||||||||||||||    
T  51837967 aaatgattaattgtgttgatttcaatgataaaattaatatcatttactaaaata 51838020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 37497628 - 37497548
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||||||| |||||| || |||| ||||||||| ||| |||||||||  || |||||||||  | ||||||||||||    
T  37497628 cgtttaagatttatgcacgattattaaggaaatgatttattgtgttgattttgatggtaaaattagtatcatttactaaaa 37497548  T

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Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 38795480 - 38795416
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||  |||||||||| | ||||| ||||||||||||| |||| |||||||| |||||||||    
T  38795480 cgtttaatgtttgtgcacgatatttaaggaaatgattaattgtgtttatttcaatggtaaaatta 38795416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 45710986 - 45710906
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||  ||||||||| ||||  |||||||||||| |||||||||  || |||||||||| | ||||||||||||    
T  45710986 cgtttaaggttgatgcacggttgttaagaaaatgattaattatgttgattttgatggtaaaattaatatcatttactaaaa 45710906  T

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Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 19823146 - 19823067
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||| |||||||||| || |||| ||||||||||||| |||||||||  || ||| |||||  | ||||||||||||    
T  19823146 gtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgattttgatggtagaattagtatcatttactaaaa 19823067  T

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Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 36460395 - 36460478
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatat 152  Q
    |||||||  |||||||||| || ||||  |||| ||||||| |||| ||||||||||||||||||  | |||||| ||||||||    
T  36460395 cgtttaaagtttgtgcacgattattaagaaaattattaattgtgttaatttcaatagtaaaattagtaacatttattaaaatat 36460478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 44301698 - 44301616
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||| ||||||| ||  |||||| |||||  |||||| |||||||||||||  ||||||||  | ||||||||||||||    
T  44301698 cgtttaaggtttgtgcccgacttttaaggaaatatttaattatgttgatttcaatgataaaattagtatcatttactaaaata 44301616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 12736560 - 12736633
Alignment:
Q  78 tttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||||| ||||||| ||||||||||||| ||||||||  |||  ||||||||  | ||||||||| ||||    
T  12736560 tttgtgcacgatttttaaggaaatgattaattgtgttgattctaatgataaaattagtatcatttactacaata 12736633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 54726608 - 54726535
Alignment:
Q  82 tgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatctt 155  Q
    ||||||||| ||||  |||||||||| | |||||||||  || |||||||||| | |||||||||||| |||||    
T  54726608 tgcacggttattaagaaaatgattaaatgtgttgattttgatggtaaaattaatatcatttactaaaacatctt 54726535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 52206849 - 52206909
Alignment:
Q  92 ttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatat 152  Q
    |||| |||||||||| ||   ||||||||||| |||||||||| | |||||||||||||||    
T  52206849 ttaaggaaatgattagttaaattgatttcaatggtaaaattaatatcatttactaaaatat 52206909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 169 - 362
Target Start/End: Complemental strand, 4246469 - 4246276
Alignment:
Q  169 tatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctctaccnnnnnnnn 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||            
T  4246469 tatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagtttttgccgttttccatttcacagttattactctctacctttttttt 4246370  T
Q  269 ccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactgtatgctcagaaaaagacaataagcaaagacaact 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4246369 ccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacattgtatgctcagaaaaagacaataagcaaagacaact 4246276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 1248581 - 1248663
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||| |||||||||| | ||||||||||||||    
T  1248581 cgtttaagatttgtgcacggttattaaggaaattattaattatgttgatttcaatggtaaaattaatatcatttactaaaata 1248663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 8724987 - 8725066
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||| |||||||||| || |||||||||||||||||| ||||||||||||| |||||||||| | ||||||||||||    
T  8724987 gtttaaggtttgtgcacgattattaaagaaatgattaattgtgttgatttcaatggtaaaattaatatcatttactaaaa 8725066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 27542931 - 27542840
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata-tcttatta 159  Q
    |||||||| |||||||||| || |||| ||||||||| ||| ||||||||||||| |||||||||| |||||||||||||||| ||||||||    
T  27542931 cgtttaaggtttgtgcacgattattaaggaaatgattgattgtgttgatttcaatggtaaaattaataccatttactaaaatactcttatta 27542840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 37184058 - 37184142
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatctt 155  Q
    |||||| |||||||| | |||||||| ||||||||||||  |||||||||||| |||||||||| | ||||||||||||||||||    
T  37184058 tttaagttttgtgcaagatttttaaaaaaatgattaattgagttgatttcaatggtaaaattaatatcatttactaaaatatctt 37184142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 31655189 - 31655105
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    |||||||  |||||| ||| || |||||||||||||||||| ||||||||||||| |||||||||| | ||||||||| ||||||    
T  31655189 cgtttaaagtttgtgtacgattattaaagaaatgattaattgtgttgatttcaatggtaaaattaatatcatttactataatatc 31655105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 8698444 - 8698381
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    ||||||| |||||||||| || |||||||||||||||||| ||||||||||||| |||||||||    
T  8698444 gtttaaggtttgtgcacgattattaaagaaatgattaattgtgttgatttcaatggtaaaatta 8698381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 32440277 - 32440195
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||| ||| |||||||| | ||||||||||||||||||||| |||| ||||||||  ||||||||| | ||||||||||||||    
T  32440277 cgttaaaggtttgtgcatgatttttaaagaaatgattaattgtgttaatttcaatgataaaattaatatcatttactaaaata 32440195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 4818687 - 4818607
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| |||||||||| || |||| ||||| ||||||| ||||||||||||| |||||||||  | ||||||||||||    
T  4818687 cgtttaaggtttgtgcacgattattaaggaaataattaattgtgttgatttcaattgtaaaattagtagcatttactaaaa 4818607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 29570528 - 29570464
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    ||||||||||||||||||| || |||||||||||||||||| ||||||||| |||  ||||||||    
T  29570528 cgtttaagatttgtgcacgattattaaagaaatgattaattgtgttgattttaatgttaaaatta 29570464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 27580708 - 27580654
Alignment:
Q  97 gaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    ||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||    
T  27580708 gaaatgattaattgtgttgatttcaatggtaaaattaatatcatttactaaaata 27580654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 9515882 - 9515802
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| |||||||||| || ||||   ||||||||||| ||||||||||||| |||||||||  | ||||||||||||    
T  9515882 cgtttaaggtttgtgcacgattattaagataatgattaattgtgttgatttcaatggtaaaattagtatcatttactaaaa 9515802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 38508164 - 38508228
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||||||||||| || |||||||  |||||||||||| |||| |||||||| |||||||||    
T  38508164 cgtttaagatttgtgctcgatttttaagaaaatgattaattgtgttaatttcaatggtaaaatta 38508228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 40530201 - 40530281
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| | |||||||| || ||||  |||||||||||| ||||||||||||| |||||||||  | ||||||||||||    
T  40530201 cgtttaaggtctgtgcacgattattaagaaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaa 40530281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 843572 - 843509
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    ||||||| |||||||||| || ||||  ||||||||||||||||||||||||||  ||||||||    
T  843572 gtttaaggtttgtgcacgattattaagaaaatgattaattttgttgatttcaatgataaaatta 843509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 15439299 - 15439378
Alignment:
Q  72 ttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    ||||| |||||||||| | ||||| ||||||||||||| | || |||||||| |||||||||  | ||||||||||||||    
T  15439299 ttaagttttgtgcacgatatttaaggaaatgattaattgtattaatttcaatggtaaaattagtatcatttactaaaata 15439378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 30512675 - 30512753
Alignment:
Q  82 tgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata-tcttatta 159  Q
    |||||| || |||| ||||||||||||| | ||||||||||| |||||||||| | |||||||||| ||| ||||||||    
T  30512675 tgcacgattattaaggaaatgattaattgtattgatttcaatggtaaaattaacatcatttactaagatactcttatta 30512753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 30553015 - 30553093
Alignment:
Q  82 tgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata-tcttatta 159  Q
    |||||| || |||| ||||||||||||| | ||||||||||| |||||||||| | |||||||||| ||| ||||||||    
T  30553015 tgcacgattattaaggaaatgattaattgtattgatttcaatggtaaaattaacatcatttactaagatactcttatta 30553093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 2232050 - 2232114
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||| |||||||||| || ||||  |||||| ||||| ||||||||||||| |||||||||    
T  2232050 cgtttaaggtttgtgcacgattattaagaaaatgaataattgtgttgatttcaatggtaaaatta 2232114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 15818457 - 15818521
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||| ||| |||||| || |||| |||||| |||||| ||||||||||||| |||||||||    
T  15818457 cgtttaaggtttatgcacgattattaaggaaatgtttaattgtgttgatttcaatggtaaaatta 15818521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 6615866 - 6615921
Alignment:
Q  78 tttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||||| || ||||| |||| ||||||| ||||||||||||| |||||||||    
T  6615866 tttgtgcacgattattaaataaataattaattgtgttgatttcaatggtaaaatta 6615921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 6754135 - 6754085
Alignment:
Q  98 aaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||||||||| |||||||||||||||||||||||   ||||||||||||    
T  6754135 aaatgattaattt-gttgatttcaatagtaaaattaatgtcatttactaaaa 6754085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 29374449 - 29374398
Alignment:
Q  98 aaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||||||| |||||||||||||  ||||||||| | ||||||||||||    
T  29374449 aaatgattaattatgttgatttcaatgataaaattaatagcatttactaaaa 29374398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 7827903 - 7827985
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||| ||||| |||| || ||||  |||| ||||||| ||||||||||||| |||||||||  | |||||| |||||||    
T  7827903 cgtttaaggtttgtacacgattattaagaaaataattaattgtgttgatttcaatggtaaaattagtatcatttattaaaata 7827985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 11904342 - 11904260
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||  |||||||||| | |||||  || ||||||||| | |||| ||||||| ||||||||| | ||||||||||||||    
T  11904342 cgtttaatgtttgtgcacgatctttaagaaagtgattaattgtattgagttcaataataaaattaatatcatttactaaaata 11904260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 18841595 - 18841533
Alignment:
Q  89 tttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||| |||||||||||| | ||||||| ||| |||||||||| | |||||| |||||||    
T  18841595 tttttaaaaaaatgattaattatattgatttaaatggtaaaattaatatcatttaataaaata 18841533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 40900052 - 40899974
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||| ||| ||||||||| |||| ||||||||||||| |||||||||  || | |||||||  | ||||||||||||    
T  40900052 tttaaggtttatgcacggttattaaggaaatgattaattgtgttgattttgatggcaaaattagtatcatttactaaaa 40899974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 41496213 - 41496152
Alignment:
Q  72 ttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    ||||| ||||| |||| || ||||| |||| ||||||| ||||||||||||| |||||||||    
T  41496213 ttaaggtttgtacacgattattaaaaaaataattaattgtgttgatttcaatggtaaaatta 41496152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 22848394 - 22848426
Alignment:
Q  102 gattaattttgttgatttcaatagtaaaattaa 134  Q
    |||||||| ||||||||||||||||||||||||    
T  22848394 gattaattgtgttgatttcaatagtaaaattaa 22848426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 41478959 - 41478879
Alignment:
Q  73 taagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    |||| ||||||| || |||||||  |||||||||||| || | |||||||| |||||||||    ||||||||||||||||    
T  41478959 taaggtttgtgcgcgatttttaagaaaatgattaattgtgcttatttcaatggtaaaattagtgtcatttactaaaatatc 41478879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 41492434 - 41492354
Alignment:
Q  73 taagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    |||| ||||||| || |||||||  |||||||||||| || | |||||||| |||||||||    ||||||||||||||||    
T  41492434 taaggtttgtgcgcgatttttaagaaaatgattaattgtgcttatttcaatggtaaaattagtgacatttactaaaatatc 41492354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 163 - 356
Target Start/End: Original strand, 13761283 - 13761476
Alignment:
Q  163 ctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctctaccnn 262  Q
    |||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||      
T  13761283 ctatgctatatgtagcgacaaaaagtttcgcgaatatctcacaaattatgttttataagcttttgccgttttccatttcaaagttattactctctacctt 13761382  T
Q  263 nnnnnnccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactgtatgctcagaaaaagacaataagcaaag 356  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13761383 ttttttccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcagacactgtatgctcagaaaaagacaataagcaaag 13761476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 16806016 - 16805933
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    ||||||| |||||||||| || |||||||||||||||||| ||||||||| |||||||||||||  | ||||||||||||||||    
T  16806016 gtttaaggtttgtgcacgattattaaagaaatgattaattgtgttgattttaatagtaaaattagtatcatttactaaaatatc 16805933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 16845297 - 16845214
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    ||||||| |||||||||| || |||||||||||||||||| ||||||||| |||||||||||||  | ||||||||||||||||    
T  16845297 gtttaaggtttgtgcacgattattaaagaaatgattaattgtgttgattttaatagtaaaattagtatcatttactaaaatatc 16845214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 16377633 - 16377715
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    ||||||||||||||||||| || |||||||||||||||||| |||||||| |||| |||||||||| | ||||||| ||||||    
T  16377633 cgtttaagatttgtgcacgattattaaagaaatgattaattgtgttgattacaatggtaaaattaatatcatttaccaaaata 16377715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 19937813 - 19937731
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||| |||||||||| || |||| ||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||    
T  19937813 cgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattaatatcatttactaaaata 19937731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 45235717 - 45235637
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| |||||||||| || |||| ||||||||| ||| ||||||||||||| |||||||||| | ||||||||||||    
T  45235717 cgtttaaggtttgtgcacgattattaaggaaatgattgattgtgttgatttcaatggtaaaattaatatcatttactaaaa 45235637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 39691626 - 39691535
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata-tcttatta 159  Q
    |||||||| |||||||||| || ||||  |||||||||||| |||||||||||||  ||||||||| | |||||||||||||| ||||||||    
T  39691626 cgtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgatttcaatgataaaattaatatcatttactaaaatactcttatta 39691535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 17695466 - 17695383
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatat 152  Q
    |||||||| |||||||||| || |||| ||||||||||||| | ||||||||||| |||||||| | | ||||||| |||||||    
T  17695466 cgtttaaggtttgtgcacgattattaaggaaatgattaattgtattgatttcaatggtaaaattgatatcatttacaaaaatat 17695383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 3323263 - 3323327
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||| |||||||||| || ||| | |||||||||||| ||||||||||||| |||||||||    
T  3323263 cgtttaaggtttgtgcacgattattataaaaatgattaattgtgttgatttcaatggtaaaatta 3323327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 14523349 - 14523433
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    |||||||  ||| |||| |||| |||| |||||||||  || ||||||||||||| |||||||||| | ||||||||||||||||    
T  14523349 cgtttaaagtttatgcaaggttattaaggaaatgattttttgtgttgatttcaatggtaaaattaatatcatttactaaaatatc 14523433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 16463825 - 16463745
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||| ||||||||| |||| ||||||||||||| |||||||||  || |||||||||  | ||||||||||||    
T  16463825 cgtttaaggtttatgcacggttattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaa 16463745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 31448670 - 31448750
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| |||||||||| || |||| ||||||||||||| |||||||||  || ||||||||| |  ||||||||||||    
T  31448670 cgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgattttgatggtaaaattagagtcatttactaaaa 31448750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 39443849 - 39443789
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaa 129  Q
    |||||||| |||||||||  || ||||  ||||||||||||||||||||||||||||||||    
T  39443849 cgtttaaggtttgtgcacaattattaagaaaatgattaattttgttgatttcaatagtaaa 39443789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 43410553 - 43410478
Alignment:
Q  78 tttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    |||||||||| || |||| ||||| ||||||| ||||||| |||||  ||||||||| | ||||||||||||||||    
T  43410553 tttgtgcacgattattaaggaaattattaattgtgttgatatcaatgataaaattaatatcatttactaaaatatc 43410478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 5789627 - 5789689
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||| |||||||||| || |||| ||||||||||||| | |||| ||||||||||||||||    
T  5789627 tttaaggtttgtgcacgattattaaggaaatgattaattgtattgaattcaatagtaaaatta 5789689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 26607946 - 26608008
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatt 132  Q
    ||||||| |||||||||| || ||||  |||||||||||| ||||||||||||| ||||||||    
T  26607946 gtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgatttcaatggtaaaatt 26608008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 43115779 - 43115861
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||  ||||||| || || |||||||||||||||||| |||||||||||||  |||| |||  | ||||||||||||||    
T  43115779 cgtttaaagtttgtgcgcgattattaaagaaatgattaattgtgttgatttcaatgataaagttagtagcatttactaaaata 43115861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 1206709 - 1206764
Alignment:
Q  98 aaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    |||||||||||| ||||||||||| | |||||||||  | ||||||||||||||||    
T  1206709 aaatgattaattatgttgatttcagtggtaaaattagtaacatttactaaaatatc 1206764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 32783487 - 32783420
Alignment:
Q  82 tgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||||| ||||  |||||||||||| |||| ||||  ||||||||||||| | ||||||||||||    
T  32783487 tgcacggttattaagaaaatgattaattgtgtttattttgatagtaaaattaatatcatttactaaaa 32783420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 35314010 - 35313959
Alignment:
Q  82 tgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||| || |||| ||||||||||||| ||||||||||||| |||||||||    
T  35314010 tgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaatta 35313959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 37322565 - 37322482
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaa-tgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||| ||| |||||| || |||| |||| ||||| ||| ||||||||||||| |||||||||| | |||||| |||||||    
T  37322565 cgtttaaggtttatgcacgattattaaggaaaatgattgattgtgttgatttcaatggtaaaattaatatcatttattaaaata 37322482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 18853177 - 18853231
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaat 123  Q
    ||||||| ||||||||||| | ||||| ||||| ||||||| |||||||||||||    
T  18853177 cgtttaaaatttgtgcacgatctttaaggaaataattaattgtgttgatttcaat 18853231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 43699605 - 43699658
Alignment:
Q  98 aaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||||| | |||||||||||||||||||||||  | |||||| |||||||    
T  43699605 aaatgattaactgtgttgatttcaatagtaaaattagtatcatttattaaaata 43699658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 17346363 - 17346422
Alignment:
Q  92 ttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatat 152  Q
    |||||||||| ||||||| | |||||||||| ||||||||||| | |||||| ||||||||    
T  17346363 ttaaagaaat-attaattattttgatttcaaaagtaaaattaatatcatttattaaaatat 17346422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 27501515 - 27501579
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||| |||||| | | || |||| |||||||| |||| ||||||||||||| |||||||||    
T  27501515 cgtttaaggtttgtgtatgattattaaggaaatgataaattatgttgatttcaatggtaaaatta 27501579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 36794420 - 36794356
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||||||  |||| |||| |||| ||||||||||||| |||||||||  || |||||||||    
T  36794420 cgtttaagattgatgcatggttattaaggaaatgattaattgtgttgattttgatggtaaaatta 36794356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 39785724 - 39785660
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||| ||  ||||||||| |||| ||||||||||||| |||||||||  || |||||||||    
T  39785724 cgtttaaggttgatgcacggttattaaggaaatgattaattgtgttgattttgatggtaaaatta 39785660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 160 - 355
Target Start/End: Complemental strand, 1814390 - 1814193
Alignment:
Q  160 gggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctctac 259  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1814390 gggctatgctatatgtagcgacagaaagtctcgctaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctttac 1814291  T
Q  260 c--nnnnnnnnccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactgtatgctcagaaaaagacaataagcaaa 355  Q
    |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1814290 cttttttttttccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactgtatgctgagaaaaagacaataagcaaa 1814193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 42616888 - 42616971
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatat 152  Q
    |||||||| |||||||| | || |||||||||||||||| | ||||||||||||| |||||||||| | |||||||||||||||    
T  42616888 cgtttaagttttgtgcatgattattaaagaaatgattaactgtgttgatttcaatggtaaaattaatatcatttactaaaatat 42616971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 38405087 - 38405169
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||| |||||||||| || |||| ||||||||||||| ||||||||| ||| |||||||||| | ||||||||||||||    
T  38405087 cgtttaaggtttgtgcacgattattaaggaaatgattaattctgttgatttaaatggtaaaattaatatcatttactaaaata 38405169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 20598248 - 20598168
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaat 150  Q
    ||||||||||||| ||||  ||||||||||||| |||||||||||||||||||| ||| |||||| | ||| |||||||||    
T  20598248 gtttaagatttgtacacgacttttaaagaaatgtttaattttgttgatttcaattgtataattaatatcatctactaaaat 20598168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 28500875 - 28500958
Alignment:
Q  68 ccgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    ||||||||  |||||||||| || |||| ||||||||| ||| ||||||||||||| |||||||||| | ||||||||||||||    
T  28500875 ccgtttaatgtttgtgcacgattattaaggaaatgattgattgtgttgatttcaatggtaaaattaatatcatttactaaaata 28500958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 7061649 - 7061735
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatctt 155  Q
    |||||||| ||||| |||| || |||| ||||||||||||| ||||||||||||| |||||||||  | ||||||||| ||||||||    
T  7061649 cgtttaaggtttgtacacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtatcatttactataatatctt 7061735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 46396867 - 46396948
Alignment:
Q  68 ccgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||||| |||||||||| |  ||||  |||||||||||| ||||||||||||| |||||||||| | ||||||||||||    
T  46396867 ccgtttaaggtttgtgcacgatcattaagtaaatgattaattgtgttgatttcaatggtaaaattaatagcatttactaaaa 46396948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 34360791 - 34360711
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||  |||||||||| || |||||||||||||||||| | ||||||||||| |||||||||  | ||||||||||||    
T  34360791 cgtttaaagtttgtgcacgattattaaagaaatgattaattgtattgatttcaatggtaaaattagtagcatttactaaaa 34360711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 47464350 - 47464430
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| |||| ||||| || |||| ||||||||||||| ||||||||||||| |||||||||  | ||||||||||||    
T  47464350 cgtttaaggtttgagcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaa 47464430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 52247413 - 52247497
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    ||||||||  ||||||||| || ||||  |||||||||||| |||| |||||||| |||||||||| || |||||||||||||||    
T  52247413 cgtttaaggattgtgcacgattattaagaaaatgattaattgtgttaatttcaatggtaaaattaatacaatttactaaaatatc 52247497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 54506924 - 54506840
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    ||||||||||||||  |||||| ||||  |||||||||| | ||||||||||||| |||||||||| | |||||| |||||||||    
T  54506924 cgtttaagatttgtttacggttattaagaaaatgattaactgtgttgatttcaatggtaaaattaatatcatttattaaaatatc 54506840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 4972696 - 4972633
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatt 132  Q
    ||||||||||||||||||| || |||| ||||||||||||| ||||||||||||| | ||||||    
T  4972696 cgtttaagatttgtgcacgattattaatgaaatgattaattgtgttgatttcaattgaaaaatt 4972633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 11288615 - 11288705
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatcttatta 159  Q
    |||||||| ||| || ||| || ||||  |||||||||||| | ||||||||||| | |||||||| | ||||||||||||||||||||||    
T  11288615 cgtttaaggtttatgtacgattattaagaaaatgattaattgtattgatttcaatggcaaaattaatatcatttactaaaatatcttatta 11288705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 36985922 - 36985840
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||||||| |  ||| ||||| | ||||||||||||| ||||||||||||| |||||||||  | ||||||||||||||    
T  36985922 cgtttaagatttttatacgatttttcaggaaatgattaattgtgttgatttcaatggtaaaattagtatcatttactaaaata 36985840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 49428327 - 49428409
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||| ||| |||||| || |||| |||||||||| || ||||||||||||| |||||||||| |  |||||||||||||    
T  49428327 cgtttaaggtttttgcacgattattaaggaaatgattatttgtgttgatttcaatggtaaaattaatataatttactaaaata 49428409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 6643654 - 6643731
Alignment:
Q  78 tttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatctt 155  Q
    |||| ||||| || |||| ||||||||||||| ||||||||||||| |||||||||  | |||||||||||| |||||    
T  6643654 tttgagcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacatctt 6643731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 35311208 - 35311273
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaa 134  Q
    |||||||| |||||||||| || |||| ||||||||||||| |||| |||||||| ||||||||||    
T  35311208 cgtttaaggtttgtgcacgattattaaggaaatgattaattatgttaatttcaatggtaaaattaa 35311273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 42517652 - 42517705
Alignment:
Q  98 aaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||||||| ||||||||||||| |||||||||| | ||||||||||||||    
T  42517652 aaatgattaattgtgttgatttcaatggtaaaattaagatcatttactaaaata 42517705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 16821316 - 16821400
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    |||||||| |||||||||| || |||| | ||||||||||| |||||||||||||  ||||||||  | ||||||||| ||||||    
T  16821316 cgtttaaggtttgtgcacgattattaatgcaatgattaattgtgttgatttcaatgataaaattagtatcatttactataatatc 16821400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 51625219 - 51625139
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||  |||||||||| || ||||  |||||||||||| ||||||||||||| |||||||||  | ||||||||||||    
T  51625219 cgtttaaagtttgtgcacgattattaagaaaatgattaattgtgttgatttcaatggtaaaattagtaacatttactaaaa 51625139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 2653553 - 2653465
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata-tcttatta 159  Q
    |||||||||||||||| | || |||||  ||||||||||| ||||||||||||| |||||||||  | |||||| ||||||| ||||||||    
T  2653553 gtttaagatttgtgcatgattattaaa--aatgattaattgtgttgatttcaattgtaaaattagtatcatttattaaaatactcttatta 2653465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 41711442 - 41711525
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    ||||||| |||||||||  ||||||  ||||||||||||| ||||||||| ||| |||||||||| | |||||  |||||||||    
T  41711442 gtttaaggtttgtgcacaatttttatggaaatgattaattatgttgattttaatggtaaaattaatatcattttttaaaatatc 41711525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 462092 - 462010
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    |||||||||||||||   |||||||  |||||||||||| | ||||||||||| |||||| ||| |  |||||||||||||||    
T  462092 tttaagatttgtgcataatttttaagaaaatgattaattgtattgatttcaatggtaaaagtaatattatttactaaaatatc 462010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 52869208 - 52869126
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||| |||||||||  || |||| ||||| ||||||| |||||||||||||||||| ||||| | | |||| |||||||    
T  52869208 cgtttaaggtttgtgcacaattattaaggaaataattaattgtgttgatttcaatagtaagattaatatcgtttattaaaata 52869126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 39397480 - 39397399
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaat 150  Q
    |||||||  |||||||||| | ||||| ||||||||||||| ||||||||||| | ||||| ||||   |||||||||||||    
T  39397480 cgtttaaagtttgtgcacgatgtttaaggaaatgattaattatgttgatttcattggtaaatttaatgtcatttactaaaat 39397399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 3689698 - 3689618
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||| || |||||| |||||||||||||||||| | |||||||  || |||||||||  | ||||||||||||    
T  3689698 cgtttaaggtttatgtacggttattaaagaaatgattaattgtattgattttgatggtaaaattagtatcatttactaaaa 3689618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 8175575 - 8175647
Alignment:
Q  79 ttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    ||||||| | || ||||| |||||| ||||| ||||||||||||| |||||||||| | |||||| |||||||    
T  8175575 ttgtgcatgattattaaaaaaatgaataattgtgttgatttcaatggtaaaattaatatcatttattaaaata 8175647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 32884937 - 32884873
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||| |||||||||| || ||||  |||||||||||| ||||||||||||| ||| |||||    
T  32884937 cgtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgatttcaatggtagaatta 32884873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 40122839 - 40122919
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| |||||||||| || |||| |||||||||||||  |||||||| |||  ||||||||  | ||||||||||||    
T  40122839 cgtttaagctttgtgcacgattattaaggaaatgattaattgcgttgattttaatgttaaaattagtagcatttactaaaa 40122919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 43237379 - 43237299
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||| |||||| || |||| ||||||||||||| |||| |||||||| |||||||||  |  |||||||||||    
T  43237379 cgtttaaggtttatgcacgattattaaggaaatgattaattgtgtttatttcaatggtaaaattagtaatatttactaaaa 43237299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 2942653 - 2942720
Alignment:
Q  92 ttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatcttatta 159  Q
    |||||||||||||||||| |||||||||| ||  ||||||||  | |||||||||||| | |||||||    
T  2942653 ttaaagaaatgattaattgtgttgatttcgatgataaaattagtagcatttactaaaacaccttatta 2942720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 53412224 - 53412161
Alignment:
Q  89 tttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatat 152  Q
    |||||||  ||| |||||||||| ||||||||||| |||||||||  | |||||||||||||||    
T  53412224 tttttaagaaaacgattaattttattgatttcaatggtaaaattagtatcatttactaaaatat 53412161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 3098830 - 3098768
Alignment:
Q  93 taaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatctt 155  Q
    |||| |||||||||||| | |||||||||||  ||||||| | | ||||||||||||||||||    
T  3098830 taaaaaaatgattaattatattgatttcaatgataaaattgatatcatttactaaaatatctt 3098768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 3670015 - 3669965
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgattt 119  Q
    |||||||||||| |||| | |||||||| |||||||||||| |||||||||    
T  3670015 cgtttaagatttatgcatgatttttaaaaaaatgattaattgtgttgattt 3669965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 5841412 - 5841494
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||| |||||||||   | |||| ||||||||| |||  |||||||| ||| |||||||||| | ||||||||||||||    
T  5841412 cgtttaaggtttgtgcacaactattaaggaaatgattgattgcgttgattttaatggtaaaattaatatcatttactaaaata 5841494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 30192332 - 30192258
Alignment:
Q  78 tttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatat 152  Q
    ||||| |||| |||||||  |||||||||||| |||||||||||||  |||||||||   ||||| |||||||||    
T  30192332 tttgtacacgatttttaagaaaatgattaattgtgttgatttcaattataaaattaatgtcatttgctaaaatat 30192258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 49175919 - 49176001
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||| |||||||| | |||||||  |||||||||||| ||  |||||||||  ||||||||  | ||||||||||||||    
T  49175919 cgtttaaggtttgtgcatgatttttaagaaaatgattaattgtggagatttcaatgataaaattagtatcatttactaaaata 49176001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 13016453 - 13016404
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgattt 119  Q
    ||||||| |||| |||| |||||||| |||||||||||||| ||||||||    
T  13016453 gtttaaggtttgagcacagtttttaaggaaatgattaatttggttgattt 13016404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 5618678 - 5618594
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    |||||||  ||||||| || || ||||| ||||||| | || ||||||||| ||| ||||||||||||  ||||| |||||||||    
T  5618678 cgtttaatgtttgtgctcgattattaaaaaaatgatgagttgtgttgattttaatggtaaaattaaaattatttattaaaatatc 5618594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 16411352 - 16411416
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||||||||||| | ||||| ||  |||| ||||||| |||||||||||||  ||||||||    
T  16411352 cgtttaagatttgtgcccagttttaaagaaaataattaattatgttgatttcaatgataaaatta 16411416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 17114576 - 17114496
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||  ||||| ||| |||| ||||||||||||| |||||||||  || |||||||||  | ||||||||||||    
T  17114576 cgtttaaggttgatgcacagttattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaa 17114496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 22130183 - 22130143
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaatt 109  Q
    |||||||| ||||||||||||| |||| |||||||||||||    
T  22130183 cgtttaaggtttgtgcacggttattaaggaaatgattaatt 22130143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 30682181 - 30682265
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    |||||||| ||| ||||||  | ||||| |||||||||||| |||| |||| | | |||||||||| | ||||||||| ||||||    
T  30682181 cgtttaaggtttttgcacgactattaaaaaaatgattaattgtgttaattttattggtaaaattaatatcatttactataatatc 30682265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 31257561 - 31257521
Alignment:
Q  93 taaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    ||||||||||||||||||| ||||||| ||| |||||||||    
T  31257561 taaagaaatgattaattttattgattttaattgtaaaatta 31257521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 53346895 - 53346815
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||| ||||||||||| || ||||  |||| ||| ||| ||||  ||||||| |||||||||| | ||||||||||||    
T  53346895 cgtttaaaatttgtgcacgattattaagaaaataattgattgtgttagtttcaatggtaaaattaatagcatttactaaaa 53346815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 7920429 - 7920284
Alignment:
Q  14 ataaattaaagaattgaaagttgagaatgtact--cactgtctcaaaataatctcaccgtttaagatttgtgcacggtttttaaagaaatgattaatttt 111  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||| ||  ||||||||||||||||||| |||||||||||||||||||||||    
T  7920429 ataaattaaagaattgaaagttgagaatgtacttacactgtctcaaaataatatc--cgtttaagatttgtgcacgatttttaaagaaatgattaatttt 7920332  T
Q  112 gttgatttcaatagtaaaattaaaaccatttactaaaatatcttatta 159  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  7920331 gttgatttcaatggtaaaattaaaaccatttactaaaatatcttatta 7920284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 1225183 - 1225100
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatat 152  Q
    ||||||||| |||||||||  |||||||||||||||||||| ||||||||| |||||||||||||| |  ||||||||||||||    
T  1225183 cgtttaagagttgtgcacgagttttaaagaaatgattaattgtgttgatttaaatagtaaaattaatattatttactaaaatat 1225100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 21804527 - 21804597
Alignment:
Q  89 tttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatcttatta 159  Q
    ||||||||||||||||||||| | || |||||||| |||||||||  | |||||||| |||||||||||||    
T  21804527 tttttaaagaaatgattaattgtattaatttcaattgtaaaattagtatcatttacttaaatatcttatta 21804597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 31894188 - 31894268
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||||||||||| | | || ||||  |||||||||||| ||||||||||||| |||||||||  | ||||||||||||    
T  31894188 cgtttaagatttgtgtatgattattaagaaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaa 31894268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 3720219 - 3720282
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatt 132  Q
    |||||||| |||||||||| || |||| ||||||||||||| |||||||||||||  |||||||    
T  3720219 cgtttaaggtttgtgcacgattattaatgaaatgattaattgtgttgatttcaattataaaatt 3720282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 27367423 - 27367494
Alignment:
Q  78 tttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||||| || |||||||||||||||||| ||||||||| | | ||||||||||   ||||||||||||    
T  27367423 tttgtgcacgattattaaagaaatgattaattgtgttgattttagttgtaaaattaattgcatttactaaaa 27367494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 27457770 - 27457841
Alignment:
Q  78 tttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||||| || |||||||||||||||||| ||||||||| | | ||||||||||   ||||||||||||    
T  27457770 tttgtgcacgattattaaagaaatgattaattgtgttgattttagttgtaaaattaattgcatttactaaaa 27457841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 4590610 - 4590659
Alignment:
Q  103 attaattttgttgatttcaatagtaaaattaaaaccatttactaaaatat 152  Q
    ||||||| |||||||||||||||||||||||| | | |||||||||||||    
T  4590610 attaattgtgttgatttcaatagtaaaattaatatcgtttactaaaatat 4590659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 13909551 - 13909478
Alignment:
Q  78 tttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||||| || |||| ||||||||||| | ||||||||||||| |||||||||    ||||||||||||||    
T  13909551 tttgtgcacgattattaaggaaatgattaaatgtgttgatttcaatggtaaaattagtgacatttactaaaata 13909478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 17829055 - 17828990
Alignment:
Q  90 ttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatctt 155  Q
    |||||| ||||| ||||||  |||| ||||||| ||||||||||| | ||||||||||||||||||    
T  17829055 ttttaaggaaattattaatagtgttaatttcaacagtaaaattaatatcatttactaaaatatctt 17828990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 1781938 - 1781858
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||| |||||| || ||||  |||||||||||| ||||||| ||||| |||||||||  | ||||||||||||    
T  1781938 cgtttaaggtttatgcacgattgttaagaaaatgattaattatgttgatctcaatggtaaaattagtagcatttactaaaa 1781858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 6802067 - 6801987
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||||||  |||| |||| ||||  |||||||||||| |||||||||  || |||||||||| | ||||||||||||    
T  6802067 cgtttaagattgatgcatggttattaagaaaatgattaattatgttgattttgatggtaaaattaatatcatttactaaaa 6801987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 13087634 - 13087586
Alignment:
Q  101 tgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||||| ||||||||||||| |||||||||| | ||||||||||||    
T  13087634 tgattaattgtgttgatttcaatggtaaaattaatatcatttactaaaa 13087586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 32440623 - 32440703
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||||||| ||||||||| || | ||||||||||||| |||||||||  || |||||||||  |  |||||||||||    
T  32440623 cgtttaagatttatgcacggttatttaggaaatgattaattgtgttgattttgatggtaaaattagtattatttactaaaa 32440703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 15058253 - 15058171
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||| |||||||||| || ||||  ||||||||||||  ||| |||||||| |||||||||    ||||||||||||||    
T  15058253 cgtttaaggtttgtgcacgattattaagaaaatgattaattaagttaatttcaatggtaaaattagtggcatttactaaaata 15058171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 11655924 - 11655988
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||| ||| ||||||||| ||||  |||||||||||| |||||||||  || |||||||||    
T  11655924 cgtttaaggtttatgcacggttattaagaaaatgattaattgtgttgattttgatggtaaaatta 11655988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 160 - 362
Target Start/End: Original strand, 142817 - 143011
Alignment:
Q  160 gggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctctac 259  Q
    ||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  142817 gggctatactatatgtcgcgacaaaaagtatcgcgaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctccac 142916  T
Q  260 c-nnnnnnnnccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactgtatgctcagaaaaagacaataagcaaagac 358  Q
    |         |||||||||| ||||||||         |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  142917 ctttttttttccactcaaaatttggtcac---------atgaaggcacatgaaggctgaagcaaacactgtatgctcagaaaaagacaataagcaaaggc 143007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 39300921 - 39301001
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||||||||||| ||| || |||||||||||||||||| |||||||||| || |||||||||| | ||||||||||||    
T  39300921 cgtttaagatttgtgtacgattattaaagaaatgattaattatgttgatttcgatggtaaaattaatatcatttactaaaa 39301001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 1875572 - 1875652
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| |||||||||| || |||| ||||||||||||| ||||||||||||| |||||||||  | ||||||||||||    
T  1875572 cgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaa 1875652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 12559708 - 12559646
Alignment:
Q  90 ttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatat 152  Q
    |||| ||||||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||    
T  12559708 tttttaagaaatgattaattgtgttgattttaataataaaattaataccatttactaaaatat 12559646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 40109860 - 40109790
Alignment:
Q  79 ttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||||  |  |||||||||||    
T  40109860 ttgtgcacggtttttaaagaaatgattaattgaattgatttcaatagtaaaattagtataatttactaaaa 40109790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 159
Target Start/End: Complemental strand, 41092121 - 41092039
Alignment:
Q  78 tttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata-tcttatta 159  Q
    |||||| ||| |||||||||||| |||||||| ||||||||||||| |||||||||| | |||||| ||||||| ||||||||    
T  41092121 tttgtgaacgatttttaaagaaacgattaattgtgttgatttcaatggtaaaattaatatcatttattaaaatactcttatta 41092039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 32476423 - 32476341
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||| ||||||||||||| ||||  |||||||| ||| |||||||||||||  ||||||||| | |||||| |||||||    
T  32476423 cgtttaaggtttgtgcacggttattaagaaaatgattgattctgttgatttcaatgataaaattaatatcatttattaaaata 32476341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 39405898 - 39405812
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatctt 155  Q
    |||||||| |||||||||| || |||| ||||||||||||| |||| ||||||||  ||||||||  | ||||||||| ||||||||    
T  39405898 cgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttaatttcaatgataaaattagtatcatttactataatatctt 39405812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 21216081 - 21216145
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||| |||||||| | || |||| ||||||||||||| ||||||||||||| |||||||||    
T  21216081 cgtttaaggtttgtgcatgattattaaggaaatgattaattgtgttgatttcaatggtaaaatta 21216145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 33765794 - 33765718
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaa 147  Q
    |||||| |||||||||  ||||||| ||||||||||||| ||||||||| |||| ||||||||  | ||||||||||    
T  33765794 tttaaggtttgtgcacaatttttaaggaaatgattaattatgttgattttaatactaaaattactatcatttactaa 33765718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 34948667 - 34948731
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||||||||| |||  || |||| ||||||||||||| ||||||||| |||||||||||||    
T  34948667 cgtttaagatttgtacacaattattaaggaaatgattaattgtgttgatttaaatagtaaaatta 34948731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 36967497 - 36967417
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||| |||||| || |||| ||||||||||||| |||||||||  || |||||||||| | ||||||||||||    
T  36967497 cgtttaaggtttatgcacgattattaaggaaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaaa 36967417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 39482751 - 39482671
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||||||||||||||| || ||||  |||||||||||| ||||||||||||  |||||||||  |  |||||||||||    
T  39482751 cgtttaagatttgtgcacgattattaagaaaatgattaattgtgttgatttcaagggtaaaattagtagaatttactaaaa 39482671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 42972490 - 42972570
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||| |||||||||| || ||||  |||||||||||| | ||||||||||| |||||||||| | | ||||||||||||    
T  42972490 tttaaggtttgtgcacgattattaagaaaatgattaattgttttgatttcaatggtaaaattaatatcgtttactaaaata 42972570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 44648513 - 44648592
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||| ||| |||| ||||||||||||| ||||||||| ||| |||||||||||| |||||||||  | ||||||||||||    
T  44648513 cgttttagagttgtacacggtttttaaa-aaatgattagtttagttgatttcaatggtaaaattagtatcatttactaaaa 44648592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 7703159 - 7703218
Alignment:
Q  92 ttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||| ||||| ||||||| ||||||||||||| |||||||||| | ||||||||||||||    
T  7703159 ttaaggaaataattaattgtgttgatttcaatggtaaaattaatatcatttactaaaata 7703218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 40028623 - 40028568
Alignment:
Q  98 aaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    |||||||||||| ||||||||||||| |||||||||| | |||||| |||||||||    
T  40028623 aaatgattaattatgttgatttcaatggtaaaattaatagcatttattaaaatatc 40028568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 45034580 - 45034541
Alignment:
Q  92 ttaaagaaatgattaattttgttgatttcaatagtaaaat 131  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  45034580 ttaaagaaatgattaatgttgttgatttcaatagtaaaat 45034541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 7173027 - 7172970
Alignment:
Q  92 ttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||||||||||||| |||||||||||||  ||||||||  | ||||||||||||    
T  7173027 ttaaagaaatgattaattgtgttgatttcaatgataaaattagtagcatttactaaaa 7172970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 6611833 - 6611769
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    ||||||||||||   |||| || ||||| |||||||||||| ||||||||||||| |||||||||    
T  6611833 cgtttaagatttacacacgattattaaaaaaatgattaattatgttgatttcaatggtaaaatta 6611769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 17719238 - 17719322
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    ||||||||||||||||||| || ||||| |||||||||||| |  |||||| ||| ||||| |||  |  |||||||||||||||    
T  17719238 cgtttaagatttgtgcacgattattaaaaaaatgattaattgtaatgattttaatggtaaagttagtattatttactaaaatatc 17719322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 44761502 - 44761554
Alignment:
Q  97 gaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||||||||| ||||||||||||| |||||||||  | ||||||||||||    
T  44761502 gaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaa 44761554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 5053155 - 5053213
Alignment:
Q  91 tttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||| ||||||||||||| |||||||||  || |||||||||| | ||||||||||||    
T  5053155 tttaaggaaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaaa 5053213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 39890747 - 39890677
Alignment:
Q  79 ttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||| || |||||||||||||||||| ||  ||||| ||||||| ||||||||  | ||||||||||||    
T  39890747 ttgtgcgcgatttttaaagaaatgattagttgagttgacttcaataataaaattagtagcatttactaaaa 39890677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 42887104 - 42887054
Alignment:
Q  101 tgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    ||||||||| ||||||||||||||| |||||||  | ||||||||||||||    
T  42887104 tgattaattgtgttgatttcaatagcaaaattagtatcatttactaaaata 42887054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 396614 - 396675
Alignment:
Q  92 ttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    |||| ||||||||||||| ||||||||||||  |||||||||  | ||||||||| ||||||    
T  396614 ttaaggaaatgattaattatgttgatttcaacggtaaaattagtatcatttactacaatatc 396675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 39329430 - 39329370
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatt 132  Q
    |||||| |||||||||  ||||||| ||||||||||||| |||||||||||||  |||||||    
T  39329430 tttaagttttgtgcacaatttttaa-gaaatgattaattgtgttgatttcaatgataaaatt 39329370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 1739772 - 1739712
Alignment:
Q  73 taagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||| |||||| ||| || |||| ||||| ||||||| ||||||||||||| |||||||||    
T  1739772 taaggtttgtgtacgattattaaggaaataattaattgtgttgatttcaatggtaaaatta 1739712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 27294042 - 27294122
Alignment:
Q  72 ttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatat 152  Q
    ||||| |||||||||| ||||||||||| | ||||||| |||| |||| |||  ||||||||  | | |||||||||||||    
T  27294042 ttaaggtttgtgcacgatttttaaagaagttattaattgtgttcatttgaatgataaaattagtatcttttactaaaatat 27294122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 45425646 - 45425726
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||| |||| | || ||||  |||||||||||| ||||||||| ||| |||||||||| | |||||| |||||    
T  45425646 cgtttaagttttatgcatgattattaagaaaatgattaattgtgttgattttaatggtaaaattaataacatttattaaaa 45425726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 30866111 - 30866019
Alignment:
Q  68 ccgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata-tcttatta 159  Q
    ||||||||| |||||||||| || |||||||||||||||||| |||| |||||||| ||| |||||| | |||||||||||||| ||||||||    
T  30866111 ccgtttaaggtttgtgcacgattattaaagaaatgattaattgtgttaatttcaatggtataattaatatcatttactaaaatactcttatta 30866019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 34100534 - 34100619
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatctt 155  Q
    |||||||||||||  ||| || ||||  |||||||||||| |||||||||||||||||||||||  | ||||||||||||||||||    
T  34100534 gtttaagatttgtcaacgattattaagaaaatgattaattgtgttgatttcaatagtaaaattagtagcatttactaaaatatctt 34100619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 22738844 - 22738760
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    |||||||| ||| |||||| || |||||||||||||||||| ||| ||||||||| |||||||||  | ||||||||||||||||    
T  22738844 cgtttaaggtttatgcacgattattaaagaaatgattaattgtgtagatttcaatggtaaaattagtatcatttactaaaatatc 22738760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 34947643 - 34947563
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| |||||||| | || |||||||||||||||||| ||||||||||||| |||||||||  | ||||||||||||    
T  34947643 cgtttaaggtttgtgcatgtttattaaagaaatgattaattgtgttgatttcaatggtaaaattattatcatttactaaaa 34947563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 26974172 - 26974107
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaa 134  Q
    |||||||| |||||||||| || |||| ||||||||||||| ||||||||||||| ||||||||||    
T  26974172 cgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattaa 26974107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 7463356 - 7463274
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    ||||||||  |||||||||||| |||| ||||||||||||| |||||||||||||  ||||||||  | |||||||| |||||    
T  7463356 cgtttaaggattgtgcacggttattaaggaaatgattaattgtgttgatttcaatgataaaattagtagcatttacttaaata 7463274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 32346039 - 32346129
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata-tcttatta 159  Q
    ||||||| |||||| |||||| |||| ||||| ||| ||| ||||||||||||| |||||||||| | ||| |||||||||| ||||||||    
T  32346039 gtttaaggtttgtgtacggttattaaggaaataattgattgtgttgatttcaatggtaaaattaatatcatctactaaaatactcttatta 32346129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 8592425 - 8592490
Alignment:
Q  68 ccgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    ||||||||| |||||||| | || |||||||||||||||||| ||||||||||||| || ||||||    
T  8592425 ccgtttaaggtttgtgcatgattattaaagaaatgattaattgtgttgatttcaatggttaaatta 8592490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 32018700 - 32018789
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata-tcttatta 159  Q
    ||||| |||| || ||| ||||||| ||||||| ||||| ||||||||||||||||||||||   | |||||||||||||| ||||||||    
T  32018700 tttaaaatttttgtacgatttttaatgaaatgaataattgtgttgatttcaatagtaaaatttctatcatttactaaaatactcttatta 32018789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 16904522 - 16904458
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||| ||||||||   |||||||  |||||||||||| |||||||||||||||||||||||    
T  16904522 cgtttaaggtttgtgcaaaatttttaagaaaatgattaattgtgttgatttcaatagtaaaatta 16904458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 28103876 - 28103812
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||| |||||||||| || ||||  |||||||||||| ||||||||||||| |||||||||    
T  28103876 cgtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgatttcaatggtaaaatta 28103812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 29835400 - 29835480
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||||||| || || |||| ||||||||||||| ||||||||| ||| |||||||||  | ||||||||||||    
T  29835400 cgtttaaggtttgtgcgcgcttattaaggaaatgattaattatgttgatttaaatggtaaaattagtagcatttactaaaa 29835480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 43874066 - 43873986
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||  |||| |||| |||||||||||||||||| |||||||||  || |||||||||| | ||||||||||||    
T  43874066 cgtttaaggttgatgcatggttattaaagaaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaaa 43873986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 7457416 - 7457471
Alignment:
Q  78 tttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||||| || ||||| |||||||||||| ||||||||||||| |||||||||    
T  7457416 tttgtgcacgattattaaaaaaatgattaattatgttgatttcaatggtaaaatta 7457471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 2850867 - 2850949
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||| | |||||||| | || |||| ||||||||||||| |||||||||||||  ||||||||| |  |||||||||||||    
T  2850867 cgtttatggtttgtgcatgattattaaggaaatgattaattatgttgatttcaatgataaaattaatattatttactaaaata 2850949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 12631446 - 12631384
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||| |||||||||| || |||| ||||| ||||||| | |||||||||||||||||||||    
T  12631446 tttaaggtttgtgcacgattattaaggaaataattaattgtattgatttcaatagtaaaatta 12631384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 2459612 - 2459548
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||  |||||||||| || |||| ||||||||||||| ||||||||||||  |||||||||    
T  2459612 cgtttaatgtttgtgcacgattattaaggaaatgattaattgtgttgatttcaacggtaaaatta 2459548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 5524523 - 5524459
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||  |||||||||| || ||||  |||||||||||| ||||||||||||| |||||||||    
T  5524523 cgtttaaagtttgtgcacgattattaagaaaatgattaattgtgttgatttcaatggtaaaatta 5524459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 9786131 - 9786051
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| | |||||||| || |||| ||||||||||||| |||||||||  || ||||||||||   ||||||||||||    
T  9786131 cgtttaaggtctgtgcacgattattaaggaaatgattaattgtgttgattttgatggtaaaattaatttcatttactaaaa 9786051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 11373414 - 11373494
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||||  ||||||||| || |||| |||||| |||||| |||||||||| || |||||||||  | ||||||||||||    
T  11373414 cgtttaaggattgtgcacgattattaaggaaatgtttaattgtgttgatttcgatggtaaaattagtagcatttactaaaa 11373494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 24516275 - 24516355
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||| | |||| || ||||  |||||||||||| ||||||||||||| |||||||||  | ||||||||||||    
T  24516275 cgtttaaggtttatacacgattattaataaaatgattaattgtgttgatttcaatggtaaaattagtaacatttactaaaa 24516355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 40076458 - 40076378
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||| |||||| || |||||||||||||||||| |||| ||||  || |||||||||  | ||||||||||||    
T  40076458 cgtttaaggtttatgcacgattattaaagaaatgattaattgtgttaattttgatggtaaaattagtatcatttactaaaa 40076378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 42935804 - 42935724
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||  ||||||||| ||||  |||||||||||| |||||||||  || |||||||||| | ||||||||||||    
T  42935804 cgtttaaggttgatgcacggttattaagaaaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaaa 42935724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 13962100 - 13962018
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    |||||| ||| |||||| || |||| ||||||||||||| ||||||||| |||  ||||||||| | || ||| |||||||||    
T  13962100 tttaaggtttatgcacgtttattaaggaaatgattaattgtgttgattttaatgataaaattaatatcacttaataaaatatc 13962018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 19060407 - 19060452
Alignment:
Q  89 tttttaaagaaatgattaattttgttgatttcaatagtaaaattaa 134  Q
    |||| |||||||||||||||| ||||||||| ||| ||||||||||    
T  19060407 ttttgaaagaaatgattaattgtgttgatttaaattgtaaaattaa 19060452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 33819334 - 33819293
Alignment:
Q  92 ttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||| ||||||||||||| ||||||||||||| |||||||||    
T  33819334 ttaaggaaatgattaattgtgttgatttcaatggtaaaatta 33819293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 41506054 - 41506131
Alignment:
Q  72 ttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||| ||| |||||| || |||| ||||||||||||| |||| |||| ||| |||||||||  | ||||||||||||    
T  41506054 ttaaggtttatgcacgattattaaggaaatgattaattgtgttaattttaatggtaaaattagtagcatttactaaaa 41506131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 83528 - 83448
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||| |||||  || |||| ||||||||||||| |||||||||  || |||||||||  | ||||||||||||    
T  83528 cgtttaaggtttatgcacaattattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaa 83448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 17828360 - 17828412
Alignment:
Q  92 ttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttac 144  Q
    |||| |||| ||||| |||||||||||||||| |||||||||| | |||||||    
T  17828360 ttaaggaaacgattatttttgttgatttcaatggtaaaattaatatcatttac 17828412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 19271729 - 19271773
Alignment:
Q  79 ttgtgcacggtttttaaagaaatgattaattttgttgatttcaat 123  Q
    ||||||||| || ||||| |||||||||||| |||||||||||||    
T  19271729 ttgtgcacgattattaaaaaaatgattaattgtgttgatttcaat 19271773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 21390438 - 21390358
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||| |||||| || |||| ||||||||||||| |||| ||||  || |||||| ||| | ||||||||||||    
T  21390438 cgtttaaggtttatgcacgattattaaggaaatgattaattgtgttaattttgatggtaaaactaatatcatttactaaaa 21390358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 23670628 - 23670549
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| |||||||||  || |||| | ||| ||||||| |||||||||| || |||||||||| | ||||||||||||    
T  23670628 cgtttaaggtttgtgcacaattattaagggaat-attaattgtgttgatttccatggtaaaattaatagcatttactaaaa 23670549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 32018921 - 32018993
Alignment:
Q  89 tttttaaagaaatgattaattttgttga-tttcaatagtaaaattaaaaccatttactaaaata-tcttatta 159  Q
    ||||||| ||||||||||||| |||||| ||| ||||||||||||   | |||||||||||||| ||||||||    
T  32018921 tttttaatgaaatgattaattgtgttgattttgaatagtaaaatttctatcatttactaaaatactcttatta 32018993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 44180348 - 44180268
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||| | |||| || ||||  |||||||||||| ||||||||||||| |||||||||  |  |||||||||||    
T  44180348 cgtttaaggtttatacacgattattaagaaaatgattaattgtgttgatttcaatggtaaaattagtataatttactaaaa 44180268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 44424278 - 44424214
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||| ||  ||||||||| |||| ||||||||||||| |||||||||  || |||||||||    
T  44424278 cgtttaaggttgatgcacggttattaaggaaatgattaattgtgttgattttgatggtaaaatta 44424214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 26093530 - 26093446
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    ||||||||||||||||||| || ||||  |||||||||||| ||||||||||||| |||||||||| | |||||| |||||||||    
T  26093530 cgtttaagatttgtgcacgattattaagaaaatgattaattgtgttgatttcaatggtaaaattaatatcatttattaaaatatc 26093446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 917160 - 917078
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||| |||||||||| || ||||| |||||||||||| ||||||||| ||| |||||||||| | ||||||||||||||    
T  917160 cgtttaaggtttgtgcacgattattaaataaatgattaattatgttgatttaaatggtaaaattaatatcatttactaaaata 917078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 28749125 - 28749047
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||||||||||||| || |||| ||||||||||||| ||||||||||||| |||||||||  | ||||||||||||    
T  28749125 tttaagatttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaa 28749047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 39864247 - 39864156
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata-tcttatta 159  Q
    |||||||  |||||||||| || |||| ||||||||||||| ||||||||||||| |||||||||  | |||||||||||||| ||||||||    
T  39864247 cgtttaaagtttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaatactcttatta 39864156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 12039218 - 12039140
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaa 147  Q
    |||||||| |||||||||| || |||| ||||||||||||| ||||||||||||| |||||||||  | ||||||||||    
T  12039218 cgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtaacatttactaa 12039140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 34031510 - 34031591
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    ||||||| |||||||| | || |||| |||||||||| || |||||||| |||| |||||||||| | ||||||||||||||    
T  34031510 gtttaaggtttgtgcatgattattaaggaaatgattacttgtgttgattccaatggtaaaattaatatcatttactaaaata 34031591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 36702037 - 36701976
Alignment:
Q  89 tttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaat 150  Q
    ||||||| ||||||||||||| ||||||||||||| |||||||||  | |||||||||||||    
T  36702037 tttttaaggaaatgattaattatgttgatttcaatggtaaaattagtatcatttactaaaat 36701976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 36718141 - 36718080
Alignment:
Q  89 tttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaat 150  Q
    ||||||| ||||||||||||| ||||||||||||| |||||||||  | |||||||||||||    
T  36718141 tttttaaggaaatgattaattatgttgatttcaatggtaaaattagtatcatttactaaaat 36718080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 9307763 - 9307683
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||||| |||| || |||| ||||||||||| | |||||||||||||  ||||||||| | ||||||||||||    
T  9307763 cgtttaaggtttgtacacgattattaaggaaatgattaactgtgttgatttcaatgataaaattaatagcatttactaaaa 9307683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 11450018 - 11449954
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaa 134  Q
    ||||||| |||||||||| || |||| |||||| |||||| ||||||||||||| ||||||||||    
T  11450018 gtttaaggtttgtgcacgattattaaggaaatggttaattatgttgatttcaatggtaaaattaa 11449954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 30754923 - 30755007
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    |||||||||||| |||||| || |||| ||||||||||||| ||||||||| ||  |||||||| | |  |||||||||||||||    
T  30754923 cgtttaagatttatgcacgattattaaggaaatgattaattgtgttgattttaagggtaaaatttatattatttactaaaatatc 30755007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 6267838 - 6267921
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatat 152  Q
    |||||||| |||||||||  ||||||||||||||||||||| ||||||||| |||  ||||| ||  | ||| |||||||||||    
T  6267838 cgtttaaggtttgtgcactatttttaaagaaatgattaattgtgttgattttaatgataaaactagtatcatgtactaaaatat 6267921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 7759343 - 7759260
Alignment:
Q  77 atttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata-tcttatta 159  Q
    |||| |||||| || ||||| |||| ||||||| ||||||||||||| || ||||||| | |||||||||||||| ||||||||    
T  7759343 atttatgcacgattattaaaaaaataattaattgtgttgatttcaatggtgaaattaatatcatttactaaaatactcttatta 7759260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 8896343 - 8896397
Alignment:
Q  98 aaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatat 152  Q
    |||||||| ||| ||||||||||||| |||||||||| | |||||||||||||||    
T  8896343 aaatgattgattgtgttgatttcaatggtaaaattaatatcatttactaaaatat 8896397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 16395029 - 16395111
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||| ||| |||||| || ||||  |||||||||||| |||||||||  ||||||||||||  | ||||||||||||||    
T  16395029 cgtttaaggtttatgcacgattattaagaaaatgattaattgtgttgattttgatagtaaaattagtatcatttactaaaata 16395111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 24880984 - 24880930
Alignment:
Q  97 gaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    ||||||||| ||| ||||||||||||| |||||||||| | ||||||||||||||    
T  24880984 gaaatgattgattatgttgatttcaatggtaaaattaatatcatttactaaaata 24880930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 31042931 - 31042869
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||| |||||||| | || |||| ||||||||||||| ||||||||||||| |||||||||    
T  31042931 tttaaggtttgtgcatgattattaaggaaatgattaattgtgttgatttcaatggtaaaatta 31042869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 33733245 - 33733326
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||  |||||||||| || |||| |||||||||| || ||||||||||||| |||||||||  | ||||||||||||||    
T  33733245 cgtttaaagtttgtgcacgattattaaggaaatgatta-ttgtgttgatttcaatggtaaaattattaacatttactaaaata 33733326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 42410117 - 42410051
Alignment:
Q  82 tgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaa 148  Q
    ||||||||| ||||| |||||||||||| |||||||||  || |||||||||| | |||||||||||    
T  42410117 tgcacggttattaaaaaaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaa 42410051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 24991635 - 24991700
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaa 134  Q
    |||||||| ||||| |||| || |||| ||||||||||||| ||||||||||||  ||||||||||    
T  24991635 cgtttaaggtttgtacacgattattaaggaaatgattaattgtgttgatttcaacggtaaaattaa 24991700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 26257943 - 26258004
Alignment:
Q  90 ttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||||||||||||||| | ||||||||||||| ||||| |  | ||||||||||||||    
T  26257943 ttttaaagaaatgattaattgtattgatttcaatagcaaaatgattatcatttactaaaata 26258004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 27687375 - 27687298
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaa 148  Q
    |||||| |||||||||  || ||||| ||||||||| || ||||||||||||| |||||||||| |  ||||||||||    
T  27687375 tttaaggtttgtgcacaattattaaaaaaatgattagttgtgttgatttcaatggtaaaattaatattatttactaaa 27687298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 41080713 - 41080648
Alignment:
Q  90 ttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatctt 155  Q
    ||||||| |||||||||||| ||||||||| |||||||||||| | | |||||| | |||||||||    
T  41080713 ttttaaaaaaatgattaattgtgttgattttaatagtaaaatttatatcatttattgaaatatctt 41080648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 23168975 - 23169055
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||  |||||||||| || ||||  |||| ||||||| ||||||||||||| |||||||||  | ||||||||||||    
T  23168975 cgtttaaagtttgtgcacgattattaagaaaataattaattgtgttgatttcaatggtaaaattagtagcatttactaaaa 23169055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 2572604 - 2572525
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaa 148  Q
    |||||||  |||||| ||| || |||||  ||||||||||| | ||||||||||| |||||||||| | |||||||||||    
T  2572604 cgtttaaagtttgtgtacgattattaaaataatgattaattgtattgatttcaatggtaaaattaatatcatttactaaa 2572525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 5179381 - 5179460
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaa 148  Q
    |||||||| ||||| |||| || ||||  |||||||||||| ||||||||||||||| ||||| |  | |||||||||||    
T  5179381 cgtttaaggtttgtacacgattcttaacaaaatgattaattgtgttgatttcaatagcaaaatgagtatcatttactaaa 5179460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 6160441 - 6160532
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata-tcttatta 159  Q
    |||||| || ||||| ||| |||||||  |||||||||||| |||||||||||||  ||||||||  |  ||||||||||||| ||||||||    
T  6160441 cgtttacgacttgtgtacgatttttaagaaaatgattaattgtgttgatttcaatgataaaattagtattatttactaaaatactcttatta 6160532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 22181459 - 22181392
Alignment:
Q  82 tgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||||| |||| |||||||||| ||  ||| |||||||| |||||||||| | ||||||||||||    
T  22181459 tgcacggttattaaggaaatgattagttgagttcatttcaatggtaaaattaatatcatttactaaaa 22181392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 31978634 - 31978713
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaa 148  Q
    |||||||  |||||||||| || ||||  ||| |||||||| ||||||||||||| |||||||||| | || ||||||||    
T  31978634 cgtttaaagtttgtgcacgattattaagaaaaagattaattgtgttgatttcaatggtaaaattaatatcacttactaaa 31978713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 3260723 - 3260661
Alignment:
Q  69 cgtttaagatttgtgcacggttttt-aaagaaatgattaattttgttgatttcaatagtaaaa 130  Q
    ||||||||||||||| | | ||||| ||||||||||||| || |||||||||||||| |||||    
T  3260723 cgtttaagatttgtgtatgattttttaaagaaatgattagttgtgttgatttcaataataaaa 3260661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 43614533 - 43614451
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    ||||||||  |||| ||||| |||||| ||||||||||| | ||||||||| ||| |||||||||  | |||| |||||||||    
T  43614533 cgtttaaggattgtacacgggttttaaggaaatgattaagtgtgttgattttaatggtaaaattagtatcattgactaaaata 43614451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 44761537 - 44761599
Alignment:
Q  93 taaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatctt 155  Q
    |||| |||||||||||| |||| |||| |||  ||||||||| | ||||||||||||||||||    
T  44761537 taaaaaaatgattaattatgttaattttaatgataaaattaatatcatttactaaaatatctt 44761599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 20564076 - 20564113
Alignment:
Q  97 gaaatgattaattttgttgatttcaatagtaaaattaa 134  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  20564076 gaaatgataaattttattgatttcaatagtaaaattaa 20564113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 32970578 - 32970631
Alignment:
Q  98 aaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaata 151  Q
    |||||||||||| |||||||||||||  ||||||||| |  |||||||||||||    
T  32970578 aaatgattaattgtgttgatttcaatgataaaattaatattatttactaaaata 32970631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 35682796 - 35682841
Alignment:
Q  78 tttgtgcacggtttttaaagaaatgattaattttgttgatttcaat 123  Q
    |||||||||| ||||||| |||| |||||||| |||||||||||||    
T  35682796 tttgtgcacgatttttaacgaaaagattaattgtgttgatttcaat 35682841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 40144829 - 40144909
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||| ||||||  ||||| ||| ||||  |||||||||||| |||||||||  || |||||||||| | ||||||||||||    
T  40144829 cgttcaagattgatgcacagttattaagaaaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaaa 40144909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 49223968 - 49224048
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||||||  |||||||||  |||  |||||||||||| |||||||||  || |||||||||  | ||||||||||||    
T  49223968 cgtttaagattgatgcacggttactaagaaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaa 49224048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 136016 - 136096
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||||||| |||||| || ||||| |||||||||||  ||||||||||||| |||||||||| | ||||||||||||    
T  136016 cgtttaagatttatgcacgattattaaataaatgattaataatgttgatttcaatggtaaaattaatagcatttactaaaa 136096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 16233 - 16154
Alignment:
Q  70 gtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||||||||| |||| || |||| ||||||||||||| ||||||||| |||  ||||||||| | ||||||||||||    
T  16233 gtttaagatttgttcacgattattaaggaaatgattaattgtgttgattttaatgataaaattaatagcatttactaaaa 16154  T

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Target: scaffold0095 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 50340 - 50254
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatctt 155  Q
    |||||||| |||||||||| || |||| ||||||||||||| |||| ||||||||  ||||||||  | ||||||||| ||||||||    
T  50340 cgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttaatttcaatgataaaattagtatcatttactataatatctt 50254  T

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Target: scaffold0159 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 34000 - 34062
Alignment:
Q  71 tttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||| |||||||||| || |||| ||||||||||||| | |||| ||||||||||||||||    
T  34000 tttaaggtttgtgcacgattattaaggaaatgattaattgtattgaattcaatagtaaaatta 34062  T

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Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 105821 - 105740
Alignment:
Q  68 ccgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||||||||| |||| | || ||||  |||||||||||| |||| |||||||| |||||||||| | | ||||||||||    
T  105821 ccgtttaagatttatgcatgattattaagtaaatgattaattgtgtttatttcaatggtaaaattaatagcgtttactaaaa 105740  T

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Target: scaffold0470 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 1121 - 1057
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    ||||||||||||   |||| || ||||| |||||||||||| ||||||||||||| |||||||||    
T  1121 cgtttaagatttacacacgattattaaaaaaatgattaattatgttgatttcaatggtaaaatta 1057  T

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Target: scaffold0330 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 5526 - 5442
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaatatc 153  Q
    |||||||| ||||| || | || ||||  |||||||||| | |||||| |||||| |||||||||| | ||||||||||||||||    
T  5526 cgtttaaggtttgtacatgattattaagaaaatgattaactgtgttgaattcaatggtaaaattaatatcatttactaaaatatc 5442  T

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Target: scaffold0328 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 7973 - 8025
Alignment:
Q  82 tgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaa 134  Q
    ||||||||| |||| |||||||||||||||||||||||  || ||||||||||    
T  7973 tgcacggttattaaggaaatgattaattttgttgatttggatggtaaaattaa 8025  T

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Target: scaffold0294 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 17171 - 17107
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||| |||||||| | || ||||  |||||||||||| ||||||||||||| |||||||||    
T  17171 cgtttaaggtttgtgcatgattattaagaaaatgattaattgtgttgatttcaatggtaaaatta 17107  T

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Target: scaffold1809 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 697 - 743
Alignment:
Q  103 attaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    ||||||| ||||||||||||| |||||||||| | ||||||||||||    
T  697 attaattgtgttgatttcaatggtaaaattaatagcatttactaaaa 743  T

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Target: scaffold0464 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 6264 - 6313
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatt 118  Q
    |||||||  |||||||||| ||||||| ||||||||||||| ||||||||    
T  6264 cgtttaaagtttgtgcacgatttttaacgaaatgattaattgtgttgatt 6313  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 252531 - 252572
Alignment:
Q  92 ttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||||||||||||| ||||||||| ||| |||||||||    
T  252531 ttaaagaaatgattaattatgttgattttaatggtaaaatta 252572  T

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Target: scaffold0583 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 2161 - 2081
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaattaaaaccatttactaaaa 149  Q
    |||||||| ||  |||||| || |||| ||| ||||||||| |||| ||||||||  ||||||||| | ||||||||||||    
T  2161 cgtttaaggttcatgcacgattattaaggaagtgattaattgtgttaatttcaatgataaaattaatatcatttactaaaa 2081  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 1840 - 1776
Alignment:
Q  69 cgtttaagatttgtgcacggtttttaaagaaatgattaattttgttgatttcaatagtaaaatta 133  Q
    |||||||||||| | ||||||| ||||  |||||||||||| |||||||||  || |||||||||    
T  1840 cgtttaagatttatacacggttattaagaaaatgattaattatgttgattttgatggtaaaatta 1776  T

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