View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_38 (Length: 370)
Name: NF20094_low_38
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 54688209 - 54688570
Alignment:
| Q |
1 |
tataaattgcaatattgtctgaaatgtagatagggttgccacttcaacatcttgtaataagttaatcaaagccactgtttgatggtctttgtttgtagat |
100 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54688209 |
tataaattgcaatactgcctgaaatgtagatagggttgccacttcaacatcttgtaataagttaatcaaagccactgtttgatggtctttgtttgtagat |
54688308 |
T |
|
| Q |
101 |
aagatgttgctatttttggcatttcccttcaaatttaccaaggttttggagattgactttctcactaccttcctggatatcaagaacttcttaacttctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54688309 |
aagatgttgctatttttggcatttcccttcaaatttaccaaggttttggagattgactttctcactaccttcctggatatcaagaacttcttaacttctg |
54688408 |
T |
|
| Q |
201 |
aagtgagttcgacttcaccgcttcctcttcttttgcttcttcttatgagggattgaagttcccttgtgcattcttttgtgtgaattaaagcatctttagc |
300 |
Q |
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| T |
54688409 |
aagtgagttcgacttcaccgcttcctcttcttttgcttcttcttatgagggattgaagttcccttgtgcattcttttgtgtgaattaaagcatctttagc |
54688508 |
T |
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| Q |
301 |
tgcactacacacatctaatagccttaaggaacaatccaaaaggttatttaccccatattctt |
362 |
Q |
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| T |
54688509 |
tgcactacacacatctaatagccttaaggaaccatccaaaaggttatttaccccattttctt |
54688570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 2 - 362
Target Start/End: Original strand, 54700155 - 54700503
Alignment:
| Q |
2 |
ataaattgcaatattgtctgaaatgtagatagggttgccacttcaacatcttgtaataagttaatcaaagccactgtttgatggtctttgtttgtagata |
101 |
Q |
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| T |
54700155 |
ataaattgcaatattgtctgaaatgtagatagggttgccacttcaacatcttgtaataagctaatcaaagccactgtttgatggtcattgtttgtagata |
54700254 |
T |
|
| Q |
102 |
agatgttgctatttttggcatttcccttcaaatttaccaaggttttggagattgactttctcactaccttcctggatatcaagaacttcttaacttctga |
201 |
Q |
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|||||||||||| ||||| |||||||||||||||| |||||| ||||||||| | |||| |||||||||| || ||| ||| ||| |||||| | |||| |
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| T |
54700255 |
agatgttgctatgtttggtatttcccttcaaatttgccaaggctttggagatggcctttttcactacctttcttgatgtcatgaatttcttagcctctgc |
54700354 |
T |
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| Q |
202 |
agtgagttcgacttcaccgcttcctcttcttttgcttcttcttatgagggattgaagttcccttgtgcattcttttgtgtgaattaaagcatctttagct |
301 |
Q |
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| T |
54700355 |
agtgagctccaatccatc---tcc---------ccttcttcttatgatggattgaagttcccttgtacattcttttgtatgcagtaaagcatctttggct |
54700442 |
T |
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| Q |
302 |
gcactacacacatctaatagccttaaggaacaatccaaaaggttatttaccccatattctt |
362 |
Q |
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| T |
54700443 |
gcgctacacacatctaatagccttaaggatccatccaagaggttatttacccaattttctt |
54700503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 54692800 - 54692971
Alignment:
| Q |
5 |
aattgcaatattgtctgaaatgtagatagggttgccacttcaacatcttgtaataagttaatcaaag-----ccactgtttgatggtctttgtttgtaga |
99 |
Q |
| |
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||||||| |||| ||| |||||||||||| || |||| ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |
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| T |
54692800 |
aattgcagtattatctcaaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtaga |
54692899 |
T |
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| Q |
100 |
taagatgttgctatttttggcatttcccttcaaatttaccaaggttttggagattgactttctcactacctt |
171 |
Q |
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| T |
54692900 |
caagatgttataatatttggtagtgcccttcaaatttgtcaaggctttggaaatggcctttttcactacctt |
54692971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 54693016 - 54693102
Alignment:
| Q |
236 |
cttcttcttatgagggattgaagttcccttgtgcattcttttgtgtgaattaaagcatct----ttagctgcactacacacatctaa |
318 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |
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| T |
54693016 |
cttcttcttatgatggactgaagttcccttgtgcattcttttgtgtgaagtaaagcatctttaattagctgcactgcacacatctaa |
54693102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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