View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_39 (Length: 369)
Name: NF20094_low_39
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 2600837 - 2600501
Alignment:
| Q |
16 |
attaattagagaatataagtgaaaaattaatcaatattacgtcaaaaattgaaactaacatttattttgatacaatggtttgtggtttttcaaatttaac |
115 |
Q |
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| T |
2600837 |
attaattagagaatataagtgaaaaattaatcaatattacgtcaaaaattgaaactaacatttattttgataca-tggttcgtggtttttcaaatttaac |
2600739 |
T |
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| Q |
116 |
ctttattatgaaatggtgggagtaatatttcagtgatgagacattctgtctagtaattttgtgataaaaagaaaaaccagaggtgtagtaaaaaatacga |
215 |
Q |
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| T |
2600738 |
ctttattatgaaatggttggagtaatattttagtgatgagacattctgtctagtaattttgtaaaaaaaagaaaaaccagaggtgtaggaaaaaatacaa |
2600639 |
T |
|
| Q |
216 |
attaacctttgacaaaagaaacaaattaacaccactgaggttagctgaaaaatgtataactctcacacattaaatacaaagaaatgagaaattgcatatt |
315 |
Q |
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| T |
2600638 |
attaacctttgacaaaagaaacaaattaacaccactgaggttaactgaaaaatgtataactctcacacattaaatacaaagaaatgagaaattgcatatt |
2600539 |
T |
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| Q |
316 |
cgaacccatttattagcatattgaatataacaactaac |
353 |
Q |
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| T |
2600538 |
cgaacccatttattaccatattgaatataacaactaac |
2600501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 10004986 - 10004954
Alignment:
| Q |
10 |
aataatattaattagagaatataagtgaaaaat |
42 |
Q |
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| T |
10004986 |
aataatattaattagagaatataaatgaaaaat |
10004954 |
T |
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