View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_42 (Length: 345)
Name: NF20094_low_42
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 40577292 - 40576979
Alignment:
| Q |
18 |
ttaatcatttcagaaatacaaaaaagaagcactataataataaaatgtaatgttgataagcagcctggaatcaaatgccaccatacggtagccaaattca |
117 |
Q |
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| T |
40577292 |
ttaatcatttcagaaatacaaaaaagaagcactataataataaaatgtaatgttgataagcagcctggaatcaaatgccaccatccggtagccaaattca |
40577193 |
T |
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| Q |
118 |
gtataagaatcttcaacttgggaacttaattatctaaatttcaaagcacaaaccaaggaagcattatataaaaagaacagagagatgacaattaatccaa |
217 |
Q |
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| T |
40577192 |
gtataagaatcttcaacttgggaactta----tctaaatttcaaagcacaaaccaaggaagcattatataaaaagaacagagagatgacaattaatccaa |
40577097 |
T |
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| Q |
218 |
aaactgtggccaacggccaccgggcaaaggagagatttttgtctcaatgtagcttaatgttacatcttttttccaacattaggattataaaagttaatgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40577096 |
aaactgtggccaacggccaccgggcaaaggagagatttttgtctcaatgtagcttaatgttacatcttttttccaacaataggattataaaagttaatgc |
40576997 |
T |
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| Q |
318 |
ttcatttttaacattctt |
335 |
Q |
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| T |
40576996 |
ttcatttttaacattctt |
40576979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 71 - 332
Target Start/End: Original strand, 22686444 - 22686701
Alignment:
| Q |
71 |
tgataagcagcctggaatcaaatgccaccatacggtagccaaattcagtataagaatcttcaacttgggaacttaattatctaaatttcaaagcacaaac |
170 |
Q |
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| T |
22686444 |
tgataagcatcctggaatcaaattccaccatccagtagccaaattcagtataagaatcttcaacttaggaactta----tctaaatttcagagcacaaac |
22686539 |
T |
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| Q |
171 |
caaggaagcattatataaaaagaacagagagatgacaattaatccaaaaactgtggccaacggccaccgggcaaaggagagatttttgtctcaatgtagc |
270 |
Q |
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|||||| |||||||||||||||| |||||||| |||||| |||||||| ||||||| | ||||||| |||||||||||||||||||||||||||||| |
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| T |
22686540 |
taaggaaacattatataaaaagaatagagagataacaattgatccaaaacctgtggctactggccacccggcaaaggagagatttttgtctcaatgtaga |
22686639 |
T |
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| Q |
271 |
ttaatgttacatcttttttccaacattaggattataaaagttaatgcttcatttttaacatt |
332 |
Q |
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| T |
22686640 |
ttaatgttacatctcttttccaacaataggattataaaagttaatgcttcattcttaacatt |
22686701 |
T |
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