View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_44 (Length: 341)
Name: NF20094_low_44
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 54687880 - 54687595
Alignment:
| Q |
14 |
agatacacttgtacatggaaattatatgtgtaaatatatagcaataataaagtcgaaacttgttcacaattttctgttgcaatatcttccctcttaaacc |
113 |
Q |
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| T |
54687880 |
agatacacttgtacatggaaattatatgtgtaaatatatagcaataataaagtcgaaacttgttcacaattttctgttgcaatatcttccctcttaaacc |
54687781 |
T |
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| Q |
114 |
tgatggttatatactaatattgttagatcacgacgatagctttagaatttccttttttgggacttatatcgatcatgctattttgcttttcttaaaatga |
213 |
Q |
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| T |
54687780 |
tgatggttatttactaatattgttagatcacgacgatagctttagaatttccttttttgggacttctatcgataatgctattttgcttttcttaaaatga |
54687681 |
T |
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| Q |
214 |
gttgaacgtatatggtgtataaggtcaaattggcctagtatccatgacaaatggacggaattggatcacctgctgccacatgactg |
299 |
Q |
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| T |
54687680 |
gttgaacgtatctggtgtataaggtcaaatcggcctagtatccatgacagatggacggaattggatcacctgctgccacatgactg |
54687595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 54687594 - 54687535
Alignment:
| Q |
264 |
atggacggaattggatcacctgctgccacatgactgcagcttatgatagagaggtgtttt |
323 |
Q |
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| T |
54687594 |
atggacagaattggatcacctgctgccacatgactgcagcttatgatagagaggtgtttt |
54687535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 54692461 - 54692412
Alignment:
| Q |
14 |
agatacacttgtacatggaaattatatgtgtaaatatatagcaataataa |
63 |
Q |
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| T |
54692461 |
agatacacttgtacatggaaattataggtgtaaatgtagagtaataataa |
54692412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 54699826 - 54699798
Alignment:
| Q |
14 |
agatacacttgtacatggaaattatatgt |
42 |
Q |
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| T |
54699826 |
agatacacttgtacatggaaattatatgt |
54699798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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