View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_46 (Length: 334)
Name: NF20094_low_46
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_46 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 41388522 - 41388203
Alignment:
| Q |
1 |
aattccaacagcttccattccaaccatggaaggctggaaaagaacctcgggacaacggaaacgctcagcaccaatagtgatgatctgtccatcaggaagc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41388522 |
aattccaacagcttccattccaaccatggaaggctggaaaagaacctcaggacaacggaaacgctcagcaccaatagtgattatctgtccatcaggaagc |
41388423 |
T |
|
| Q |
101 |
tcatagctcttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttcacatctcttacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41388422 |
tcatagctcttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttcacatctcttacaa |
41388323 |
T |
|
| Q |
201 |
tttcacgctcggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatcagtgaggtcacgccccgctaaatcaagacgaaggat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41388322 |
tttcacgctcggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatcagtgaggtcacgccctgctaaatcaagacgaaggat |
41388223 |
T |
|
| Q |
301 |
agcatgtggaagggcatatc |
320 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
41388222 |
agcatgtggaagggcatatc |
41388203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 1262124 - 1262221
Alignment:
| Q |
29 |
gaaggctggaaaagaacctcgggacaacggaaacgctcagcaccaatagtgatgatctgtccatcaggaagctcatagctcttctcaacagcagaact |
126 |
Q |
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| T |
1262124 |
gaaggctggaagagtacttcggggcaacggaatctctcggaacctattgttatgacctgtccatcaggcaactcgtagctcttctccacggcagaact |
1262221 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 9 - 318
Target Start/End: Original strand, 59258 - 59567
Alignment:
| Q |
9 |
cagcttccattccaaccatggaaggctggaaaagaacctcgggacaacggaaacgctcagcaccaatagtgatgatctgtccatcaggaagctcatagct |
108 |
Q |
| |
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||||||||||||| |||||||| || ||| | | ||||| ||||| | ||||||||||| ||||||||||||| || |||||||| | ||||||||| |
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| T |
59258 |
cagcttccattcccaccatggatggttggtataagacctctggacacctaaaacgctcagcgccaatagtgatgacttgcccatcaggcaactcatagct |
59357 |
T |
|
| Q |
109 |
cttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttcacatctcttacaatttcacgc |
208 |
Q |
| |
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|||||| || ||||| || || || || || || |||||||||||| | ||||||||||| |||| |||||||||||||| ||| || |||||||||||| |
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| T |
59358 |
cttctccactgcagagctggtcttggatgtctctagctcttgctcatagtcaagggcaatgtaagccagcttttccttcatatccctcacaatttcacgc |
59457 |
T |
|
| Q |
209 |
tcggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatcagtgaggtcacgccccgctaaatcaagacgaaggatagcatgtg |
308 |
Q |
| |
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|| |||| ||| || |||||||||||||| || || || |||||||||| | |||||| |||||||| || || ||||||||||||||||| || |||| |
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| T |
59458 |
tctgctgaggtggtaaaagaataaccacgttctgtcagaattttcatcatgtaatcagtcaggtcacgaccagccaaatcaagacgaaggatggcgtgtg |
59557 |
T |
|
| Q |
309 |
gaagggcata |
318 |
Q |
| |
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| |||||||| |
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| T |
59558 |
ggagggcata |
59567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 68549 - 68239
Alignment:
| Q |
10 |
agcttccattccaaccatggaaggctggaaaagaacctcgggacaacggaaacgctcagcaccaatagtgatgatctgtccatcaggaagctcatagctc |
109 |
Q |
| |
|
||||||||| |||| |||||| |||||||| || || || |||||||||||||| || ||||| || ||||| | |||||||||||| | |||||||||| |
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| T |
68549 |
agcttccataccaatcatggatggctggaagagtacttcaggacaacggaaacgttcggcacctattgtgatcacctgtccatcaggtaactcatagctc |
68450 |
T |
|
| Q |
110 |
ttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttcacatctcttacaatttcacgct |
209 |
Q |
| |
|
||||||||||| || || || || || ||||| | |||||| ||| ||||||| ||||| || || || ||||||||||| ||||| || |||||||||| |
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|
| T |
68449 |
ttctcaacagctgagctcgtcttcgaggtttctaactcttgttcataatcaagagcaatgtaggatagtttttccttcacgtctctcacgatttcacgct |
68350 |
T |
|
| Q |
210 |
cggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatcagtgaggtcacgccccgctaaatcaagacgaaggatagcatgtgg |
309 |
Q |
| |
|
||||||| || |||||||| || ||||||||||| | ||||||||| | ||| || ||||| ||||| || || | ||| | ||| ||||| || ||||| |
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| T |
68349 |
cggctgttgtggtgaaagagtatccacgctcggttaagattttcatgagggcgtctgtgagatcacgacctgcaagatccaaacgcaggattgcgtgtgg |
68250 |
T |
|
| Q |
310 |
aagggcatatc |
320 |
Q |
| |
|
||||||||||| |
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| T |
68249 |
aagggcatatc |
68239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 65 - 320
Target Start/End: Original strand, 37050495 - 37050750
Alignment:
| Q |
65 |
tcagcaccaatagtgatgatctgtccatcaggaagctcatagctcttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaaggg |
164 |
Q |
| |
|
|||||||| || ||||| | ||| |||||||| ||||||||| ||||||||||||| || || ||||| | |||||| | ||| ||||| ||||||| | |
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| T |
37050495 |
tcagcaccgatcgtgatcacctgcccatcaggtagctcataggtcttctcaacagctgagctagttttagcagtttccaactcctgctcgtaatcaagag |
37050594 |
T |
|
| Q |
165 |
caatataagacagcttttccttcacatctcttacaatttcacgctcggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatc |
264 |
Q |
| |
|
||||||||| || || ||||||| ||| ||||||||||| ||||| |||| || ||||||| || ||||||||||| | || |||||||| ||||| |
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| T |
37050595 |
caatataagccaatttctccttcatatcccttacaatttctcgctctgctgaagtggtgaaagtgtagccacgctcggttaaaatcttcatcaatgcatc |
37050694 |
T |
|
| Q |
265 |
agtgaggtcacgccccgctaaatcaagacgaaggatagcatgtggaagggcatatc |
320 |
Q |
| |
|
|||||| ||||| || || | ||| | ||||||||| ||||||||||| ||||||| |
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|
| T |
37050695 |
agtgagatcacgacctgcaagatccaaacgaaggattgcatgtggaagtgcatatc |
37050750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 143 - 318
Target Start/End: Complemental strand, 8689801 - 8689626
Alignment:
| Q |
143 |
agctcttgctcaaaatcaagggcaatataagacagcttttccttcacatctcttacaatttcacgctcggctgtggtagtgaaagaataaccacgctcgg |
242 |
Q |
| |
|
|||||||||||| | ||||||||||| || || |||||||| ||||| || | |||||||| ||||| |||| ||| || |||||||||||||| || | |
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| T |
8689801 |
agctcttgctcatagtcaagggcaatgtatgaaagcttttctttcacgtcacgaacaatttctcgctctgctgaggtggtaaaagaataaccacgttcag |
8689702 |
T |
|
| Q |
243 |
taaggattttcatcaaggcatcagtgaggtcacgccccgctaaatcaagacgaaggatagcatgtggaagggcata |
318 |
Q |
| |
|
| | || ||||||||| ||| || |||||||| || || | ||||||||||||||| ||||||||||||||||| |
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|
| T |
8689701 |
tcaaaatcttcatcaagaaatcggtaaggtcacgaccagccagatcaagacgaaggatggcatgtggaagggcata |
8689626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 43647117 - 43647434
Alignment:
| Q |
1 |
aattccaacagcttccattccaaccatggaaggctggaaaagaacctcgggacaacggaaacgctcagcaccaatagtgatgatctgtccatcaggaagc |
100 |
Q |
| |
|
||||||| ||||||||||||| | ||| || || |||||||| || || || |||||||| | |||||| ||||| ||||| | |||||||||||||| |
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|
| T |
43647117 |
aattccagcagcttccattccgatcattgatggttggaaaaggacttctgggcaacggaacctctcagctccaattgtgataacttgtccatcaggaagt |
43647216 |
T |
|
| Q |
101 |
tcatagctcttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttcacatctcttacaa |
200 |
Q |
| |
|
|||||| | ||||||| | |||||| | |||| ||| ||||| ||||| ||| |||| | ||||| ||| | ||||| ||||| | || | |||| |
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|
| T |
43647217 |
tcatagtttttctcaattgaagaactgctctttgcagtctcaagttcttgttcataatccaaggcaacatatgcaagcttctcctttatgtcacggacaa |
43647316 |
T |
|
| Q |
201 |
tttcacgctcggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatcagtgaggtcacgccccgctaaatcaagacgaaggat |
300 |
Q |
| |
|
|||| |||||||||| ||| ||||| || || | ||| || ||||| |||||||| | |||||| || ||||| || || | ||| | ||||||||| |
|
|
| T |
43647317 |
tttcccgctcggctgaggtggtgaacatgtaccctctctcagtgaggatcttcatcaaagaatcagttagatcacgaccagcaagatccaaacgaaggat |
43647416 |
T |
|
| Q |
301 |
agcatgtggaagggcata |
318 |
Q |
| |
|
|||||||| || ||||| |
|
|
| T |
43647417 |
ggcatgtgggagtgcata |
43647434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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