View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_48 (Length: 325)
Name: NF20094_low_48
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_48 |
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| [»] scaffold0286 (1 HSPs) |
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| [»] scaffold0254 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 5e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 49 - 308
Target Start/End: Original strand, 2162128 - 2162387
Alignment:
| Q |
49 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
148 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2162128 |
tcaaaagaagacatcatttgatccatccaagaaattgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
2162227 |
T |
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| Q |
149 |
atagggtactatgacagcttcaaaaacatgaacaagtcatctgatattgatgttgttaactttcataaaaagctcacaatttattgggaaaagatggttg |
248 |
Q |
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||||||||||||||||||| |||||||| |||| | |||| |||||||||| |||||||||| ||||||| |||||||||||||||||||| |
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| T |
2162228 |
atagggtactatgacagctacaaaaacaagaacgcacagtttgatcatgatgttgttgtatttcataaaatactcacaaattattgggaaaagatggttg |
2162327 |
T |
|
| Q |
249 |
aagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgttatcactggctcttcg |
308 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||| |
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| T |
2162328 |
aagaagctgaactgaaacctcaaagagaaggcgctgcatttcgtaatcgctggctcttcg |
2162387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 49 - 292
Target Start/End: Original strand, 2168291 - 2168534
Alignment:
| Q |
49 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
148 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
2168291 |
tcaaaagaagacatcatttgatccatccaagaaactgaatgaaatgaggcgacatatggcgcaacttgaatggtacagaaagaaaacaaaaaatcttgac |
2168390 |
T |
|
| Q |
149 |
atagggtactatgacagcttcaaaaacatgaacaagtcatctgatattgatgttgttaactttcataaaaagc-tcacaatttattgggaaaagatggtt |
247 |
Q |
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||||||||||||||||||| |||||||| |||| ||| ||||| ||| |||| | | | |||||||| ||| | ||| |||||||||||||||| |
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| T |
2168391 |
atagggtactatgacagctacaaaaacaagaacgtatcagctgattatgaagttgattggtat-ttaaaaagcatcatatttttttgggaaaagatggtt |
2168489 |
T |
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| Q |
248 |
gaagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgt |
292 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
2168490 |
gaagaagctgatctgaagcctcaaagagaaggcgctgcatttcgt |
2168534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 49 - 292
Target Start/End: Original strand, 2179924 - 2180167
Alignment:
| Q |
49 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
148 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
2179924 |
tcaaaagaagacatcatttgatccatccaagaaactgaatgaaatgaggcgacatatggcgcaacttgaatggtacagaaagaaaacaaaaaatcttgac |
2180023 |
T |
|
| Q |
149 |
atagggtactatgacagcttcaaaaacatgaacaagtcatctgatattgatgttgttaactttcataaaaagc-tcacaatttattgggaaaagatggtt |
247 |
Q |
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||||||||||||||||||| |||||||| |||| ||| ||||| ||| |||| | | | |||||||| ||| | ||| |||||||||||||||| |
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| T |
2180024 |
atagggtactatgacagctacaaaaacaagaacgtatcagctgattatgaagttgattggtat-ttaaaaagcatcatatttttttgggaaaagatggtt |
2180122 |
T |
|
| Q |
248 |
gaagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgt |
292 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
2180123 |
gaagaagctgatctgaagcctcaaagagaaggcgctgcatttcgt |
2180167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 49 - 279
Target Start/End: Original strand, 2207160 - 2207390
Alignment:
| Q |
49 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
148 |
Q |
| |
|
||||||||||| || |||| ||||||| || |||| ||||||||||||| || ||| || ||| ||||||||||||||| |||||||| |||||||||| |
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| T |
2207160 |
tcaaaagaagatatcatttaatccatcaaataaacagaatgaaatgaagggatgtatagcacaagttgaatggtacaaaaagaaaacaacaaatcttgac |
2207259 |
T |
|
| Q |
149 |
atagggtactatgacagcttcaaaaacatgaacaagtcatctgatattgatgttgttaactttcataaaaagctcacaatttattgggaaaagatggttg |
248 |
Q |
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||||||||||||||||| | |||||||||| || | ||||||| |||||||||| | ||||||||||||||||||| ||||||||| |||||||||| |
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| T |
2207260 |
atagggtactatgacagttacaaaaacatgtacgaaatatctgattatgatgttgttgagtttcataaaaagctcacaagttattgggagaagatggttg |
2207359 |
T |
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| Q |
249 |
aagaagctgaactgaagcctcaaagagaagg |
279 |
Q |
| |
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|||| | |||| |||||||| ||| |||||| |
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| T |
2207360 |
aagacgttgaaatgaagcctaaaaaagaagg |
2207390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 49 - 308
Target Start/End: Complemental strand, 14978 - 14718
Alignment:
| Q |
49 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaat-gaaaacaaaaaat-cttg |
146 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
14978 |
tcaaaagaagacatcatttgatccatccaagaaattgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatagaaaacaaaaaatacttg |
14879 |
T |
|
| Q |
147 |
acatagggtactatgacagcttcaaaaacatgaacaagtcatctgatattgatgttgttaactttcataaaaagctcacaatttattgggaaaagatggt |
246 |
Q |
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||||||||||||||||||||| |||||||| |||| | |||| |||||||||| |||||||||| ||||||| |||||||| ||||||||| |
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| T |
14878 |
acatagggtactatgacagctacaaaaacaagaacgcacagtttgatcatgatgttgttgtatttcataaaatactcacaaattattggg-aaagatggt |
14780 |
T |
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| Q |
247 |
tgaagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgttatcactggctcttcg |
308 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||| |
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| T |
14779 |
tgaagaagctgaactgaaacctcaaagagaaggcgctgcatttcgtaatcgctggctcttcg |
14718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 49 - 308
Target Start/End: Complemental strand, 2408 - 2147
Alignment:
| Q |
49 |
tcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgac |
148 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
2408 |
tcaaaagaagacatcatttgatccatccaagaaactgaatgaaatgaggcgacatatggcgcaacttgaatggtacagaaagaaaacaaaaaatcttgac |
2309 |
T |
|
| Q |
149 |
atagggtactatgacagcttcaaaaacatgaacaagtcatctgatattgatgttgttaactttcataaaaagc-tca-caatttattgggaaaagatggt |
246 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| ||| ||||| ||| |||| | | |||||||| ||| | ||| ||||||||||||||| |
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| T |
2308 |
atagggtactatgacagctacaaaaacaagaacgtatcagctgattatgaagttgattggtaatttaaaaagcatcattatttttttgggaaaagatggt |
2209 |
T |
|
| Q |
247 |
tgaagaagctgaactgaagcctcaaagagaaggcgctgcgtttcgttatcactggctcttcg |
308 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| |||||| || ||||||||||| |
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|
| T |
2208 |
tgaagaagctgatctgaagcctcaaagagaaggcgctgcatttcgtactcgctggctcttcg |
2147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 27781522 - 27781362
Alignment:
| Q |
22 |
aaaaagactagaagaactatccatccatcaaaagaagacattatttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatgg |
121 |
Q |
| |
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||||| ||| |||||| ||| |||||| || ||||||| || ||| |||||||||||||| ||||||| ||||| ||||||||| |||||||||||| |
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| T |
27781522 |
aaaaaaactcgaagaaatattcatccaccagaagaagatatcgttttatccatccaagaaattgaatgacgtgaaggtacatatggcccaacttgaatgg |
27781423 |
T |
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| Q |
122 |
tacaaaatgaaaacaaaaaatcttgacatagggtactatgacagcttcaaaaacatgaaca |
182 |
Q |
| |
|
| ||||||| ||| || |||| | ||||||||||||||||||| |||||| ||||||| |
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|
| T |
27781422 |
ttcaaaatggcaactaagaatcaacaaatagggtactatgacagctacaaaaatatgaaca |
27781362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 292
Target Start/End: Complemental strand, 27785379 - 27785152
Alignment:
| Q |
65 |
tttgatccatccaagaaactgaatgaaatgaagcgacatatggcgcaacttgaatggtacaaaatgaaaacaaaaaatcttgacatagggtactatgaca |
164 |
Q |
| |
|
||||||||||| ||||| ||||||| | |||| ||||||| ||||||||||||||||||| |||| | || ||| | |||||||| ||||||| |
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|
| T |
27785379 |
tttgatccatcaaagaagttgaatgacaggaaggtggatatggcccaacttgaatggtacaaaaagaaatctaagaatgaacaaatagggtattatgaca |
27785280 |
T |
|
| Q |
165 |
gcttcaaaaacatgaacaagtcatctgatattgatgttgttaactttcataaaaagctcacaatttattgggaaaagatggttgaagaagctgaactgaa |
264 |
Q |
| |
|
||||||||||||||||| | ||| ||||||| | | || ||||||| |||||| |||||||||| |||||||||||||||||||| |||| |
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| T |
27785279 |
gcttcaaaaacatgaactttcccgatgactatgatgttaatcaattccataaaaggctcaccttttattgggagaagatggttgaagaagctgagatgaa |
27785180 |
T |
|
| Q |
265 |
gcctcaaagagaaggcgctgcgtttcgt |
292 |
Q |
| |
|
|||||||| |||||| || || |||||| |
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| T |
27785179 |
gcctcaaaaagaaggtgcagcttttcgt |
27785152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 19488225 - 19488151
Alignment:
| Q |
196 |
tgatgttgttaactttcataaaaagctcacaatttattgggaaaagatggttgaagaagctgaactgaagcctcaa |
271 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||| || |||||||||| |||| ||||||||||| |
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|
| T |
19488225 |
tgatgttgttgagtttcataaaaagctcacaatttattgggaaaa-atagttgaagaagttgaaatgaagcctcaa |
19488151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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