View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_52 (Length: 308)
Name: NF20094_low_52
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 51856840 - 51857117
Alignment:
| Q |
20 |
catttagctccttcacgatgcgctttgaagccgttataattgaaacttcaaaataacaacaaatggaaaacataataaagattatcatgcaacacatcgt |
119 |
Q |
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| T |
51856840 |
catttagctccttcacgatgcgctttgaagccgttataattggaacttcaaaataacaacaaatggaaaacataataaagattatcatgcaacgcatcgt |
51856939 |
T |
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| Q |
120 |
tggatctagaaagcaataaaaagaaattgaaaggaaaaaagtttcaattgggatatggaacaaaagataaatgaagggttaccacttaccaatcaatttc |
219 |
Q |
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| T |
51856940 |
tggatctagaaagcaataaaaagaa-ttgaaaggaaaaaagtttcaattgggatatggaacaaaagataaatgaagggttaccacttaccaatcgatttc |
51857038 |
T |
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| Q |
220 |
aatcagaaggaaagataaatttggatatgaaatttttcttgtagtgagagaggttaatgttcatttgttcttgtctgtg |
298 |
Q |
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| T |
51857039 |
aatcagcaggaaagataaatttggatatgaaatttttcttgtagtgagagaggttaatgttcatttgttcttgtctgtg |
51857117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 8945884 - 8946112
Alignment:
| Q |
20 |
catttagctccttcacgatgcgctttgaagccgttataattgaaacttcaaaataacaacaaatggaaaacataataaagattatcatgcaacacatcgt |
119 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8945884 |
catttagctccttcacgatgtgctttgaagccgttataattgaaacttcaaaataacaaca-----------taataaagattatcatgcaacacatcgt |
8945972 |
T |
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| Q |
120 |
tggatctagaaagcaataaaaagaaattgaaaggaaaaaagtttcaattgggatatggaacaaaagataaatgaagggttaccacttaccaatcaatttc |
219 |
Q |
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| T |
8945973 |
tggatctagaaagcaataaaatgaaattgaaaggaaaaaagtttcaattgggatatggaacaaaagataaatgaagggttaccacttagcaatcgatttc |
8946072 |
T |
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| Q |
220 |
aatcagaaggaaagataaatttggatatgaaatttttctt |
259 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |
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| T |
8946073 |
aatcagcaggaaagataaatttggatatgaaatttttctt |
8946112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 43263092 - 43263171
Alignment:
| Q |
22 |
tttagctccttcacgatgcgctttgaagccgttataattgaaacttcaaaataacaacaaatggaaaacataataaagat |
101 |
Q |
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|||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43263092 |
tttagctcattcacgatgcactttgaagccgtaataattgaaacttcaaaataacaacaaatgaaaaacataataaagat |
43263171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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