View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20094_low_54 (Length: 302)

Name: NF20094_low_54
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20094_low_54
NF20094_low_54
[»] chr4 (1 HSPs)
chr4 (16-302)||(47019049-47019332)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 47019332 - 47019049
Alignment:
Q  16 gaaacttcactcgacatcttatccaaagcctctagaatgccttgatgaatgagaaacactttcattttgagatgccacaaaccaaaattgttttttctgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47019332 gaaacttcactcgacatcttatccaaagcctctagaatgccttgatgaatgagaaacactttcattttgagatgccacaaaccaaaattgttttttctgt 47019233  T
Q  116 tcaaaatcaaactttattgatgttggatcatgatttacaacagaaactattttgaactttaacaaaaataatagatgccaatgcaagtcgattgattgaa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||    
T  47019232 tcaaaatcaaactttattgatgttggatcatgatttacaacagaaactatgttgaactttaacaaa---aatagatgccaatgcaagtcgattgattgaa 47019136  T
Q  216 aatcaactgagtgcataaaagcaagaaataggaatcataaattgtaaaaacataaacgaaattaggttacccagttttgagatgaac 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47019135 aatcaactgagtgcataaaagcaagaaataggaatcataaattgtaaaaacataaacgaaattaggttacccagttttgagatgaac 47019049  T

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