View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_58 (Length: 297)
Name: NF20094_low_58
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_58 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 30934224 - 30933951
Alignment:
| Q |
10 |
cagaacctgtgtcaaaaggcatacttggtgtccaaaatgatgtttatagctttggggtggtattgtgtgagcttgtgtcatctatgcttgcagaatatta |
109 |
Q |
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| T |
30934224 |
cagaacttgtgtcaaaaggcttactgggtgtccaaaatgatgtttatagctttggggtggtattgtgtgagcttgtgtcatctatgcttgcagaatatta |
30934125 |
T |
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| Q |
110 |
tattcggaatgaagaagaatgtttggcaacccttctacgcaaaaaagttgaaaaccaagctttagtagagctgttggatgtaagacttggcttcgaatca |
209 |
Q |
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| T |
30934124 |
tattcagaatgaagaagaatgtttggcaacccttctacgcaaaaaagttgaaaaccaagctttagtagagctgttggatgtaagacttggcttcgaatca |
30934025 |
T |
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| Q |
210 |
gaccttaagatcaacaagatgatgagcgctacggctgagcttgcattttggtgtttgaaatgtccacaagaatt |
283 |
Q |
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| T |
30934024 |
gaccttaagatcaacaagatgatgagcgctacggctgagcttgcattttggtgtctgaaatgtccacaagaatt |
30933951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 30964401 - 30964128
Alignment:
| Q |
10 |
cagaacctgtgtcaaaaggcatacttggtgtccaaaatgatgtttatagctttggggtggtattgtgtgagcttgtgtcatctatgcttgcagaatatta |
109 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
30964401 |
cagaacttgtgtcaaaaggcttacttggtgtccaaaatgatgtttatagctttggggtggtattgtgtgaacttttgtcatctatgcttgcagaatatta |
30964302 |
T |
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| Q |
110 |
tattcggaatgaagaagaatgtttggcaacccttctacgcaaaaaagttgaaaaccaagctttagtagagctgttggatgtaagacttggcttcgaatca |
209 |
Q |
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| T |
30964301 |
tattcagaatgaagaagaaaatctagcaaccattttatgcacaaaacttgaaaaccaaactttggttgagcttatggatctaagacttggcttcaaatca |
30964202 |
T |
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| Q |
210 |
gaccttaagatcaacaagatgatgagcgctacggctgagcttgcattttggtgtttgaaatgtccacaagaatt |
283 |
Q |
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||| ||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30964201 |
gacattaagatcaccaagatgatgaccgctacagctgagcttgcattttggtgtttgaaatgtccacaagaatt |
30964128 |
T |
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