View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_60 (Length: 286)
Name: NF20094_low_60
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 19102392 - 19102657
Alignment:
| Q |
1 |
ggacctagtaattactgaagcagaggcacataccattacggtacagcaaaaggatattccacaagaggcagtgaatcacgaaattattgcagtggatgag |
100 |
Q |
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| T |
19102392 |
ggacccagtaattactgaagcagaggcacataccattacggtacagcaaaaggatattccacaagaggcagtgaatcacgaaattattgcagtggatgag |
19102491 |
T |
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| Q |
101 |
caatcaccttcggccactgtgaatgtaccatctgaatatcaaaatttggggtccgacaccattgaaggagatacaacgcagcacttggagcatacaaaca |
200 |
Q |
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| T |
19102492 |
caatcaccctcgggcactgtgaatgtaccatctgaacatcaaaatttggggtccgacaccattgaaggagatacaacgcagcacttggagcatacaaaca |
19102591 |
T |
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| Q |
201 |
gcccaccttccccggaaaccacgcaacaacacacaccacaataggcagccattgttgcgcccatta |
266 |
Q |
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| T |
19102592 |
gcccacctcccccggaaaccatgcaacaacagacaccacaataggcatccactgttgcgcccatta |
19102657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 36031105 - 36030872
Alignment:
| Q |
8 |
gtaattactgaagcagaggcacataccattacggtacagcaaaaggatattccacaagaggcagtgaatcacgaaattattgcagtggatgagcaatcac |
107 |
Q |
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| T |
36031105 |
gtaattactgaagcagaggcacataccattacgatacagcagcaagatattccacaggaggcagtgaatcacggaattattgcagtggaggagcaatcac |
36031006 |
T |
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| Q |
108 |
cttcggccactgtgaatgtaccatctgaatatcaaaatttggggtccgacaccattgaaggagatacaacgcagcacttggagcatacaaacagcccacc |
207 |
Q |
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| T |
36031005 |
cctcggccactgtgaaggtaccatctgaacatcaaaatttggggtccgacaccattgaaggagatacaacacatcacttggagcatacaaacaacccacc |
36030906 |
T |
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| Q |
208 |
ttccccggaaaccacgcaacaacacacaccacaa |
241 |
Q |
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| T |
36030905 |
tccctcggaaaccacgcaacaatagacaccacaa |
36030872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 11868915 - 11868789
Alignment:
| Q |
8 |
gtaattactgaagcagaggcacataccattacggtacagcaaaaggatattccacaagaggcagtgaatcacgaaattattgcagtgg---atgagcaat |
104 |
Q |
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| T |
11868915 |
gtaattgctgaagcagaggcacataccattacggtacaacaacaagatattccataagaggcagtgaatcacaaaattattgcagtggaacaggagcaat |
11868816 |
T |
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| Q |
105 |
caccttcggccactgtgaatgtaccat |
131 |
Q |
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| T |
11868815 |
cacgctcggccactgcgaatgtaccat |
11868789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 21164084 - 21164035
Alignment:
| Q |
140 |
caaaatttggggtccgacaccattgaaggagatacaacgcagcacttgga |
189 |
Q |
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| T |
21164084 |
caaaacttggggtccgacaccattgaaggagatatagggcagcacttgga |
21164035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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