View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_61 (Length: 283)
Name: NF20094_low_61
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 44704274 - 44704014
Alignment:
| Q |
7 |
gaagcataggccgagtctacatcaacggtgggaaggctttaaaggtgaaagaagagacggtgataaacctaccttcagcgtgaagagatcatcaatgatc |
106 |
Q |
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| T |
44704274 |
gaagcagaggccgagtctacatcaacggtgggaaggctttaaaggtgaaagaagagacggtgataaacctaccttcagtgtgaagaggtcatctatgatc |
44704175 |
T |
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| Q |
107 |
ggacgagcacgtactggagtaacagtggaggtgtacgataaccctggtgaggagtaccacattgaaggttgcttctctcaacgttgtcgcaccgttttta |
206 |
Q |
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| T |
44704174 |
ggacgagcacgtactggagtaacagtggaggtgtacgataaccctggtgaggagtaccacattgaaggttgcttctctcaacgttgttgcacggttttta |
44704075 |
T |
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| Q |
207 |
acgcaatgaaggaaaacgtagctgagattcatcgcaaagtggaccccaccacaggtgttat |
267 |
Q |
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| T |
44704074 |
acggaatgaaggaaaacgtagctgagattcatcgcaaagtggaccccaccacaggtgttat |
44704014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 262
Target Start/End: Complemental strand, 44714970 - 44714722
Alignment:
| Q |
14 |
aggccgagtctacatcaacggtgggaaggctttaaaggtgaaagaagagacggtgataaacctaccttcagcgtgaagagatcatcaatgatcggacgag |
113 |
Q |
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| T |
44714970 |
aggccgagtctgcatcaacggtgggaaggctttaaaggtgaaaaaatggaaggtgataaaccaaccttcagcgtgaagagatcatcaatgatcggacgac |
44714871 |
T |
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| Q |
114 |
cacgtactggagtaacagtggaggtgtacgataaccctggtgaggagtaccacattgaaggttgcttctctcaacgttgtcgcaccgtttttaacgcaat |
213 |
Q |
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| T |
44714870 |
cacgtgcgggagtgacagtggaggtgtacgataacccaggtgaggagtaccatatcgaagggtgtttctctcaacgtggttgcaaagtttttaacgcgat |
44714771 |
T |
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| Q |
214 |
gaaggaaaacgtagctgagattcatcgcaaagtggaccccaccacaggt |
262 |
Q |
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| T |
44714770 |
gaaggaaattgtggctgagatttatcgtaaagtggaccccactacaggt |
44714722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 2277948 - 2278102
Alignment:
| Q |
20 |
agtctacatcaacggtgggaaggctttaaaggtgaaagaagagacggtgataaacctaccttcagcgtgaagagatcatcaatgatcggacgagcacgta |
119 |
Q |
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| T |
2277948 |
agtcttcatcaaagatgggaaggattcaaaggagagagaaaagacggtgataaaccaatcttcaatgtgaaaagatcatcaataatcgcacggtcaagaa |
2278047 |
T |
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| Q |
120 |
ctggagtaacagtggaggtgtacgataaccctggtgaggagtaccacattgaagg |
174 |
Q |
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| T |
2278048 |
tgaccataacagtggaggtacacgataacccaggtgtggagtacctcattgaagg |
2278102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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