View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_62 (Length: 279)
Name: NF20094_low_62
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 11106386 - 11106637
Alignment:
| Q |
18 |
cttaataaattaaaaccaatttgaagtatagatataacaatgtcttttgctttgttagaaataatttcattgatttttcacatagtattttctgtttgtc |
117 |
Q |
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| T |
11106386 |
cttaaaaaattaaaaccaatttgaagtatagatataacaatgtcttttgctttgttagaaataatttcattgatttttcacacagtattttctgtttgtc |
11106485 |
T |
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| Q |
118 |
ttgtatcaggcatgacacacttgtgatggtgagtggaggaagtggaatcacaccatttttctcaataattagagagttaatatatcttagcaatacattc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11106486 |
ttgtatcaggcatgacacacttgtgatggtgagtggaggaagtggaatcacaccatttttctcaataattagagagttaatatatcttagcaatacattc |
11106585 |
T |
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| Q |
218 |
aaatgcaaaacaccaaacattgtcttaatatcttccttcaagaacacttcat |
269 |
Q |
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| T |
11106586 |
aaatgcaaaacaccaaacattgtcttaatatgttccttcaaaaacacttcat |
11106637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 11119536 - 11119788
Alignment:
| Q |
18 |
cttaataaattaaaaccaatttgaagtatagatataacaatgtcttttgctttgttagaaataatttcattgatttttcacatagtattttctgtttgt- |
116 |
Q |
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| T |
11119536 |
cttaaaaaattaaaaccattttgaagtatagatataagattgtcttttgctttgttagaaataattttattgatttttcacatagtaacttatgtttgtt |
11119635 |
T |
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| Q |
117 |
cttgtatcaggcatgacacacttgtgatggtgagtggaggaagtggaatcacaccatttttctcaataattagagagttaatatatcttagcaatacatt |
216 |
Q |
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| T |
11119636 |
cttgtatcaggcatgacacacttgtgatggtgagtggaggaagtggcatcacaccatttatctctatcattagagagctaatatatcttagcactacatt |
11119735 |
T |
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| Q |
217 |
caaatgcaaaacaccaaacattgtcttaatatcttccttcaagaacacttcat |
269 |
Q |
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| T |
11119736 |
caaatgcaagacaccaaacattgtcctaatttcttcattcaagaatacttcat |
11119788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 11592608 - 11592860
Alignment:
| Q |
18 |
cttaataaattaaaaccaatttgaagtatagatataacaatgtcttttgctttgttagaaataatttcattgatttttcacatagtattttctgtttgt- |
116 |
Q |
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||||| |||||||||||||||||||||||| |||||| | |||||| ||||||||||||||||||||||||||| |||||||||||| | ||||||| |
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| T |
11592608 |
cttaaaaaattaaaaccaatttgaagtatatatataagattgtcttatgctttgttagaaataatttcattgatgtttcacatagtaactgttgtttgtt |
11592707 |
T |
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| Q |
117 |
cttgtatcaggcatgacacacttgtgatggtgagtggaggaagtggaatcacaccatttttctcaataattagagagttaatatatcttagcaatacatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| ||||||||||||||| |||||| |
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| T |
11592708 |
cttgtatcaggcatgacacacttgtgatggtgagtggaggaagtggcatcacaccatttatctctatcattagagagctaatatatcttagcactacatt |
11592807 |
T |
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| Q |
217 |
caaatgcaaaacaccaaacattgtcttaatatcttccttcaagaacacttcat |
269 |
Q |
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||||||||| ||||||||||||||| |||| ||||| ||| |||||||||||| |
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| T |
11592808 |
caaatgcaagacaccaaacattgtcctaatttcttcattcgagaacacttcat |
11592860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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