View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20094_low_66 (Length: 268)
Name: NF20094_low_66
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_66 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 4703428 - 4703170
Alignment:
| Q |
9 |
gaagaatattcatgactcaagaatatttatgttaatagttaaaaagtttaagggaaatgctaagggcacatgttaagcaacctaaattgtggaaattttg |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4703428 |
gaagaatattcatgacttaagaatatttatgttaatagttaaaaagtttaagggaaatgctaagggcacatgttaaacaacctaaattgtggaaattttg |
4703329 |
T |
|
| Q |
109 |
tctagcaaattgtgtcaatttatttttctcgatgaaatccacccttcgaagtgttttaccccaatccccacgcatggttaacccccaaaggttaccccaa |
208 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4703328 |
tctagcaaattatgtcaatttatttttctcaatgaaatccacccttcgaagtgtttt-ccccaatccccacgcatggttaacccccaaaggttaccccaa |
4703230 |
T |
|
| Q |
209 |
ttttgaacgtacaaacattggttgtttggatgctaatacatacacttcatagtaaaagca |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4703229 |
ttttgaacgtacaaacattggttgtttggatgctaatacatacacttcatagtaaaagca |
4703170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 4707679 - 4707627
Alignment:
| Q |
195 |
aaaggttaccccaattttgaacgtacaaacattggttgtttggatgctaatac |
247 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||| | |||||||||| |
|
|
| T |
4707679 |
aaaggttaccccaattttgaacatacaaacattagttgttcgaatgctaatac |
4707627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 21687455 - 21687516
Alignment:
| Q |
76 |
acatgttaagcaacctaaattgtggaaattttgtctagcaaattgtgtcaatttatttttct |
137 |
Q |
| |
|
|||||||||| ||| |||| ||| ||||||||||||| ||||||| |||||||||| |||| |
|
|
| T |
21687455 |
acatgttaagaaacataaaaagtgaaaattttgtctagaaaattgtatcaatttattcttct |
21687516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 47656427 - 47656391
Alignment:
| Q |
97 |
gtggaaattttgtctagcaaattgtgtcaatttattt |
133 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
47656427 |
gtggaaattatgtctagaaaattgtgtcaatttattt |
47656391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University