View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20094_low_67 (Length: 267)
Name: NF20094_low_67
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_67 |
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| [»] scaffold0713 (1 HSPs) |
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Alignment Details
Target: scaffold0713 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 3589 - 3817
Alignment:
| Q |
4 |
tctttgttctttcatatcaccacttcttcctcttccaaattttctactttttccttcaaatcatcaattttcttcctcaaatcgaacacccaaaataaat |
103 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3589 |
tctttgttctttcatgtcaccacttcttcctcttccaaattttctactttttccttcaaatcatcaattttcttcctcaaatcgaacacccaaaataaat |
3688 |
T |
|
| Q |
104 |
attatgcatctaagcaagctatttcatagtacaagctctatttggtagaattttgggatttgagtttgtgccttgggaaagaagaggaatacccatatag |
203 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3689 |
attatgcatctaagcaagctatttcatagtacaagctctatttggtagaattttgggatttgagtttgtgccttgggaaagaagaggaatacccatatag |
3788 |
T |
|
| Q |
204 |
tgaaagttgttcattgagacttcttggag |
232 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
3789 |
tgaaagttgttcattgagacttcttggag |
3817 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 27525720 - 27525948
Alignment:
| Q |
4 |
tctttgttctttcatatcaccacttcttcctcttccaaattttctactttttccttcaaatcatcaattttcttcctcaaatcgaacacccaaaataaat |
103 |
Q |
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|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27525720 |
tctttgttctttcatgtcaccgcttcttcctcttccaaattttctactttttccttcaaatcatcaattttcttcctcaaatcgaacacccaaaataaat |
27525819 |
T |
|
| Q |
104 |
attatgcatctaagcaagctatttcatagtacaagctctatttggtagaattttgggatttgagtttgtgccttgggaaagaagaggaatacccatatag |
203 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27525820 |
attatgcatctaagcaagctatttcatagtacaagctctatttggtagaattttgggatttgagtttgtgccttgggaaagaagaggaatacccatatag |
27525919 |
T |
|
| Q |
204 |
tgaaagttgttcattgagacttcttggag |
232 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
27525920 |
tgaaagttgttcattgagacttcttggag |
27525948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 21448235 - 21448311
Alignment:
| Q |
50 |
ctttttccttcaaatcatcaattttcttcctcaaatcgaacacccaaaataaatattatgcatctaagcaagctatt |
126 |
Q |
| |
|
|||||||| ||||||||||||| | ||||| |||||| | ||||| || ||||||||| |||||||||||||||| |
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|
| T |
21448235 |
ctttttccatcaaatcatcaatctacttccacaaatcaattacccataagaaatattattgatctaagcaagctatt |
21448311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 14648759 - 14648983
Alignment:
| Q |
4 |
tctttgttctttcatatcaccacttcttcctcttccaaattttctactttttccttcaaatcatcaattttcttcctcaaatcgaacacccaaaataaat |
103 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14648759 |
tctttgttctttcatgtcaccacttcttcctcttccaaattttctactttttccttcaaatcatcaattttcttcctcaaatcgaacacccaaaataaat |
14648858 |
T |
|
| Q |
104 |
attatgcatctaagcaagctatttcatagtacaagctctatttggtagaattttgggatttgagtttgtgccttgggaaagaagaggaatacccatatag |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14648859 |
attatgcatctaagcaagctatttcatagcacaagctctatttggtagaattttgggatatgagtttgtgccttgggaaagaagaggaatacccatatag |
14648958 |
T |
|
| Q |
204 |
tgaaagttgttcattgagacttctt |
228 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
14648959 |
tgaaagttgttcattgagacttctt |
14648983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 14658549 - 14658773
Alignment:
| Q |
4 |
tctttgttctttcatatcaccacttcttcctcttccaaattttctactttttccttcaaatcatcaattttcttcctcaaatcgaacacccaaaataaat |
103 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14658549 |
tctttgttctttcatgtcaccacttcttcctcttccaaattttctactttttccttcaaatcatcaattttcttcctcaaatcgaacacccaaaataaat |
14658648 |
T |
|
| Q |
104 |
attatgcatctaagcaagctatttcatagtacaagctctatttggtagaattttgggatttgagtttgtgccttgggaaagaagaggaatacccatatag |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14658649 |
attatgcatctaagcaagctatttcatagcacaagctctatttggtagaattttgggatatgagtttgtgccttgggaaagaagaggaatacccatatag |
14658748 |
T |
|
| Q |
204 |
tgaaagttgttcattgagacttctt |
228 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
14658749 |
tgaaagttgttcattgagacttctt |
14658773 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 34899351 - 34899392
Alignment:
| Q |
52 |
ttttccttcaaatcatcaattttcttcctcaaatcgaacacc |
93 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||| |||||| |
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| T |
34899351 |
ttttcctttaaatcatcaattttcttccacaaatcaaacacc |
34899392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 34899432 - 34899485
Alignment:
| Q |
95 |
aaaataaatattatgcatctaagcaagctatttcatagtacaagctctatttgg |
148 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
34899432 |
aaaagaaatattatatatctaggcaagctatttaatagtacaagttctatttgg |
34899485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 17654857 - 17654813
Alignment:
| Q |
51 |
tttttccttcaaatcatcaattttcttcctcaaatcgaacaccca |
95 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||||| |||||||| |
|
|
| T |
17654857 |
tttttctttcaaatcctcaattttcttccacaaatcaaacaccca |
17654813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 27199796 - 27199664
Alignment:
| Q |
8 |
tgttctttcatatcaccacttcttcctcttccaaattttctactttttccttcaaatcatcaattttcttcctcaaatcgaacacccaaaataaatatta |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27199796 |
tgttctttcatgtcaccacttcttcctcttccaaattttctactttttccttcaaatcatcaattttcttcctcaaatcgaacacccaaaataaatatta |
27199697 |
T |
|
| Q |
108 |
tgcatctaagcaagctatttcatagtacaagct |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27199696 |
tgcatctaagcaagctatttcatagtacaagct |
27199664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 57 - 218
Target Start/End: Original strand, 34377916 - 34378085
Alignment:
| Q |
57 |
cttcaaatcatcaattttcttcctcaaatcgaacacccaaaat----aaatattatgcatctaagcaagcta----tttcatagtacaagctctatttgg |
148 |
Q |
| |
|
|||||||||||||| || ||||| |||||| | |||||| ||| ||||||||||||||||| ||||||| | ||||| |||||| |||||||| |
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|
| T |
34377916 |
cttcaaatcatcaaattacttccacaaatcaatcacccataattaagaaatattatgcatctaaacaagctacgtatctcataatacaagttctatttga |
34378015 |
T |
|
| Q |
149 |
tagaattttgggatttgagtttgtgccttgggaaagaagaggaatacccatatagtgaaagttgttcatt |
218 |
Q |
| |
|
|||||||| | || | |||||||| |||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
34378016 |
aggaattttgaggttagggtttgtgctttgggaaagaagaggaatacccatatgatgaaagttgctcatt |
34378085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 19433842 - 19433878
Alignment:
| Q |
202 |
agtgaaagttgttcattgagacttcttggagatatga |
238 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
19433842 |
agtgaaagttgatcattaagacttcttggagatatga |
19433878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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