View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20094_low_68 (Length: 267)

Name: NF20094_low_68
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20094_low_68
NF20094_low_68
[»] chr4 (5 HSPs)
chr4 (12-203)||(21433545-21433736)
chr4 (63-186)||(38888023-38888146)
chr4 (83-193)||(40206073-40206185)
chr4 (36-138)||(19935468-19935569)
chr4 (61-119)||(6659362-6659419)
[»] chr7 (23 HSPs)
chr7 (43-203)||(5934519-5934680)
chr7 (53-203)||(1786598-1786749)
chr7 (61-203)||(11000857-11001000)
chr7 (54-185)||(11228915-11229046)
chr7 (61-185)||(24840077-24840201)
chr7 (61-119)||(859188-859245)
chr7 (61-119)||(1217192-1217249)
chr7 (61-119)||(13882718-13882775)
chr7 (147-199)||(35814790-35814843)
chr7 (61-185)||(6451781-6451905)
chr7 (61-116)||(13886191-13886245)
chr7 (61-119)||(27309646-27309704)
chr7 (43-115)||(30217819-30217889)
chr7 (63-119)||(27142666-27142722)
chr7 (59-126)||(1753627-1753694)
chr7 (43-138)||(4888699-4888793)
chr7 (69-122)||(29974294-29974348)
chr7 (53-126)||(45366030-45366104)
chr7 (147-184)||(1365606-1365643)
chr7 (95-185)||(1690196-1690286)
chr7 (62-126)||(1883482-1883546)
chr7 (147-203)||(3778831-3778890)
chr7 (43-115)||(4133287-4133359)
[»] chr6 (12 HSPs)
chr6 (64-138)||(33615538-33615612)
chr6 (53-119)||(29340830-29340895)
chr6 (61-203)||(1127169-1127312)
chr6 (61-119)||(3536034-3536091)
chr6 (147-203)||(32361283-32361340)
chr6 (61-119)||(3542245-3542302)
chr6 (61-115)||(30052207-30052260)
chr6 (72-185)||(24443113-24443226)
chr6 (62-185)||(11658865-11658988)
chr6 (61-119)||(27822149-27822207)
chr6 (61-115)||(30049920-30049973)
chr6 (151-203)||(3814500-3814553)
[»] chr5 (7 HSPs)
chr5 (43-126)||(22440851-22440933)
chr5 (63-119)||(18252416-18252472)
chr5 (64-119)||(21849000-21849054)
chr5 (61-119)||(40778818-40778875)
chr5 (76-119)||(19497350-19497393)
chr5 (61-119)||(26140343-26140401)
chr5 (43-116)||(8456392-8456465)
[»] chr2 (23 HSPs)
chr2 (43-126)||(15129383-15129465)
chr2 (61-203)||(33051533-33051676)
chr2 (61-174)||(23457591-23457704)
chr2 (61-199)||(21772293-21772432)
chr2 (61-203)||(5171616-5171759)
chr2 (61-119)||(27952350-27952407)
chr2 (61-119)||(27956186-27956243)
chr2 (146-193)||(1218403-1218451)
chr2 (63-203)||(32163804-32163945)
chr2 (43-114)||(28737911-28737981)
chr2 (61-119)||(22011436-22011493)
chr2 (148-186)||(33053350-33053388)
chr2 (61-119)||(33655628-33655685)
chr2 (53-122)||(8294575-8294644)
chr2 (43-120)||(36647292-36647368)
chr2 (61-116)||(2155970-2156024)
chr2 (61-116)||(31634107-31634161)
chr2 (88-126)||(4184922-4184960)
chr2 (77-119)||(12966477-12966519)
chr2 (61-119)||(31636337-31636394)
chr2 (83-119)||(1518193-1518229)
chr2 (85-174)||(18945905-18945994)
chr2 (63-119)||(32162002-32162058)
[»] chr1 (11 HSPs)
chr1 (61-181)||(50713651-50713771)
chr1 (61-185)||(10927128-10927250)
chr1 (43-174)||(9030961-9031093)
chr1 (63-183)||(8967836-8967957)
chr1 (43-119)||(28660759-28660835)
chr1 (43-114)||(23987581-23987652)
chr1 (62-116)||(13444021-13444074)
chr1 (63-126)||(40058135-40058199)
chr1 (61-119)||(8931220-8931277)
chr1 (61-119)||(50857476-50857533)
chr1 (147-199)||(10925659-10925712)
[»] chr8 (18 HSPs)
chr8 (61-119)||(2687742-2687800)
chr8 (44-138)||(24731208-24731302)
chr8 (147-203)||(16598081-16598138)
chr8 (61-119)||(22926680-22926737)
chr8 (43-117)||(42890394-42890467)
chr8 (61-119)||(42891696-42891753)
chr8 (77-174)||(26374845-26374942)
chr8 (82-174)||(2609547-2609639)
chr8 (61-119)||(22512078-22512135)
chr8 (61-119)||(22519378-22519435)
chr8 (61-119)||(22921882-22921939)
chr8 (61-119)||(23570584-23570641)
chr8 (61-119)||(6845336-6845393)
chr8 (61-119)||(18468649-18468706)
chr8 (43-120)||(2189735-2189811)
chr8 (147-203)||(14130080-14130137)
chr8 (82-183)||(16598184-16598286)
chr8 (62-119)||(37189866-37189922)
[»] chr3 (8 HSPs)
chr3 (147-203)||(20400732-20400789)
chr3 (61-124)||(52708839-52708902)
chr3 (53-119)||(5128909-5128974)
chr3 (61-119)||(43303992-43304049)
chr3 (61-119)||(43306704-43306761)
chr3 (146-185)||(1320165-1320204)
chr3 (77-119)||(365639-365681)
chr3 (63-119)||(3063771-3063826)
[»] scaffold0054 (2 HSPs)
scaffold0054 (79-203)||(49237-49362)
scaffold0054 (61-116)||(37714-37768)
[»] scaffold0240 (1 HSPs)
scaffold0240 (59-174)||(15992-16106)
[»] scaffold0110 (2 HSPs)
scaffold0110 (78-119)||(45310-45351)
scaffold0110 (61-113)||(46765-46816)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 21433545 - 21433736
Alignment:
Q  12 agagaaaggctaggaacactgatgagtacataagcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaa 111  Q
    |||||||||||||||||| ||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21433545 agagaaaggctaggaacattgatgagtacggaagcgtagtatagctggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaa 21433644  T
Q  112 atagggtttcagaattcatcataaattnnnnnnnttctctaaaatattattgaatgaataaaacttgtctcttaactacaaccgttaagctt 203  Q
    |||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  21433645 atagggttccagaattcatcataaattgagaaaattctctaaaatattattgaatgaataaaacttgtctcttagctacaactgttaagctt 21433736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 186
Target Start/End: Original strand, 38888023 - 38888146
Alignment:
Q  63 taaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatattatt 162  Q
    ||||||||||| |||||  |||||||| ||||||||||||||| ||||||||||||||| |||| ||| | |||||       |||||||||||||  ||    
T  38888023 taaacctagattgaaaataaacaaatttgcaagcgacaaacttgtgaaaatagggtttcggaatccattagaaattgagaaaattctctaaaatatggtt 38888122  T
Q  163 gaatgaataaaacttgtctcttaa 186  Q
    |||||||||||| ||| |||||||    
T  38888123 gaatgaataaaagttgactcttaa 38888146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 40206185 - 40206073
Alignment:
Q  83 acaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnn-ttctctaaaatattattgaatgaataaaacttgtct 181  Q
    |||| |||||||||||||||||| ||||||||| ||||| ||||||| || |||||        ||||||||||||||||||||||||||||| || |||    
T  40206185 acaagttcgcaagcgacaaacttgtgaaaatagtgtttcggaattcaccagaaattgagaaaaattctctaaaatattattgaatgaataaaaattatct 40206086  T
Q  182 ctta-actacaac 193  Q
    |||| ||||||||    
T  40206085 cttagactacaac 40206073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 19935569 - 19935468
Alignment:
Q  36 agtacataagcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataa 135  Q
    |||||| ||||||||  ||||  | |||||||  ||||||||||| || ||||| |||||||||||||||||||||||||||||   |||||||||| ||    
T  19935569 agtacagaagcgtaggctagccagcgctaaactcagatagaaaaa-aataaatttgcaagcgacaaacttatgaaaatagggttatggaattcatcaaaa 19935471  T
Q  136 att 138  Q
    |||    
T  19935470 att 19935468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 6659362 - 6659419
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    |||||| |||||||||||| |||||| || ||||||||||||||| |||||||||||||    
T  6659362 gctaaatctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 6659419  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 5934680 - 5934519
Alignment:
Q  43 aagcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnn 142  Q
    ||||||||  ||||| | ||||||||||||| |||||  |||||||| ||||||||||||||| |||||||||| ||||||||| ||| | |||||        
T  5934680 aagcgtaggctagcaagcgctaaacctagattgaaaagaaacaaatttgcaagcgacaaacttgtgaaaataggatttcagaatccattagaaattgaga 5934581  T
Q  143 nnnttctctaaaatattattgaatgaataaaacttgtctctta-actacaaccgttaagctt 203  Q
       ||||||||||||||||||||||||||||| |||  |||||  |||||||||||||||||    
T  5934580 aaattctctaaaatattattgaatgaataaaaattgcttcttaggctacaaccgttaagctt 5934519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 203
Target Start/End: Complemental strand, 1786749 - 1786598
Alignment:
Q  53 tagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctcta 152  Q
    ||||| |||||||||||||||||||||| ||||| || ||||||||||||| |  |||||||||||| |||||| ||||| |||||        ||||||    
T  1786749 tagcaagtgctaaacctagatagaaaaataacaagtttgcaagcgacaaacatgcgaaaatagggttccagaatccatcagaaattgcgaaaactctcta 1786650  T
Q  153 aaatattattgaatgaataaaacttgtctctta-actacaaccgttaagctt 203  Q
    |||||||||| ||||||||||| ||  ||||||  ||||||| |||||||||    
T  1786649 aaatattatttaatgaataaaagtttcctcttaggctacaactgttaagctt 1786598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 61 - 203
Target Start/End: Original strand, 11000857 - 11001000
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatatta 160  Q
    ||||||||||||| |||||  ||||| |||||||||||||||||  |||||||||||||   |||| || || |||||        ||||||||||||||    
T  11000857 gctaaacctagattgaaaagaaacaagttcgcaagcgacaaactagtgaaaatagggttcaggaatccaccagaaattgggaaaactctctaaaatatta 11000956  T
Q  161 ttgaatgaataaaacttgtctcttaa-ctacaaccgttaagctt 203  Q
    |||||||||||| | ||| ||||||| ||||||| |||||||||    
T  11000957 ttgaatgaataataattgcctcttaagctacaactgttaagctt 11001000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 11229046 - 11228915
Alignment:
Q  54 agcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaa 153  Q
    |||| ||||||||||||||| |||||||||||| || ||| ||||||||| | |||||| |||||| |||||| || || |||||        |||||||    
T  11229046 agcaagtgctaaacctagattgaaaaagaacaagtttgcaggcgacaaacgtgtgaaaaaagggttccagaatccaccagaaattgataaaactctctaa 11228947  T
Q  154 aatattattgaatgaataaaacttgtctctta 185  Q
    ||||||||||| ||||||||| ||| ||||||    
T  11228946 aatattattgagtgaataaaagttgcctctta 11228915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 24840201 - 24840077
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatatta 160  Q
    ||||||||||||| |||||  ||||| || ||||||||||||||| ||||||||||||| | |||| || || |||||        ||||||||||||||    
T  24840201 gctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaactctctaaaatatta 24840102  T
Q  161 ttgaatgaataaaacttgtctctta 185  Q
    || ||| ||||||| ||| ||||||    
T  24840101 ttcaataaataaaagttgcctctta 24840077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 859188 - 859245
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| |||||| || ||||||||||||||| |||||||||||||    
T  859188 gctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 859245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 1217192 - 1217249
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| |||||| || ||||||||||||||| |||||||||||||    
T  1217192 gctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 1217249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 13882718 - 13882775
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| |||||| || ||||||||||||||| |||||||||||||    
T  13882718 gctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 13882775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 35814843 - 35814790
Alignment:
Q  147 tctctaaaatattattgaatgaataaaacttgtctcttaa-ctacaaccgttaa 199  Q
    |||||||||||||||||||||||||||| | ||||||||| |||||||||||||    
T  35814843 tctctaaaatattattgaatgaataaaagtcgtctcttaagctacaaccgttaa 35814790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 6451781 - 6451905
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatatta 160  Q
    |||||| |||||| ||||   ||||| || ||||||||||||| | |||||||| |||||| |||| || || |||||        ||||||||||||||    
T  6451781 gctaaatctagattgaaaggaaacaagtttgcaagcgacaaacctgtgaaaataaggtttcggaatccaacaaaaattgaaaaaactctctaaaatatta 6451880  T
Q  161 ttgaatgaataaaacttgtctctta 185  Q
    |||||||||| ||| ||||||||||    
T  6451881 ttgaatgaattaaagttgtctctta 6451905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 13886191 - 13886245
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagg 116  Q
    ||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||    
T  13886191 gctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagg 13886245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 27309646 - 27309704
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||| |||||  ||||| || ||||||||||||||| |||||||||||||    
T  27309646 gctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggtt 27309704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 30217889 - 30217819
Alignment:
Q  43 aagcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatag 115  Q
    ||||||||  ||||| | ||||||||||||| ||||  |||||| |||||||||||||||||| |||||||||    
T  30217889 aagcgtaggctagcaagcgctaaacctagattgaaa--gaacaagttcgcaagcgacaaacttgtgaaaatag 30217819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 27142722 - 27142666
Alignment:
Q  63 taaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||| |||||  ||||| || ||||||||||||||| |||||||||||||    
T  27142722 taaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggtt 27142666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 1753627 - 1753694
Alignment:
Q  59 gtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaat 126  Q
    |||||||||||| || |||||  ||||| || ||||||||||||||| ||||||||| ||| ||||||    
T  1753627 gtgctaaacctaaattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagagttccagaat 1753694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 4888699 - 4888793
Alignment:
Q  43 aagcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaatt 138  Q
    ||||||||  ||||| | ||| ||||||||||||||| |||||| || ||||||||||||| | ||||||||| ||| | ||||||| || |||||    
T  4888699 aagcgtaggctagcatgcgctgaacctagatagaaaa-gaacaagtttgcaagcgacaaacctgtgaaaatagagttccggaattcaccagaaatt 4888793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 29974294 - 29974348
Alignment:
Q  69 tagataga-aaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttca 122  Q
    |||||||| ||||||||||||| |||||| |||||| |||||||||||| |||||    
T  29974294 tagatagagaaaagaacaaatttgcaagctacaaacctatgaaaataggatttca 29974348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 45366104 - 45366030
Alignment:
Q  53 tagcaggtgctaaacctagataga-aaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaat 126  Q
    ||||| |||||||| ||| ||||| ||||||| || || || |||||||||| |||||||||||| |||||||||    
T  45366104 tagcaagtgctaaatctaaatagagaaaagaataagtttgctagcgacaaacctatgaaaataggatttcagaat 45366030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 1365643 - 1365606
Alignment:
Q  147 tctctaaaatattattgaatgaataaaacttgtctctt 184  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  1365643 tctctaaaatattattgaatgaataaaagttgcctctt 1365606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 1690196 - 1690286
Alignment:
Q  95 gcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatattattgaatgaataaaacttgtctctta 185  Q
    |||||||| || |||||||||||||   |||| ||||| |||||       |||||||||||| |||| ||||||||||| ||||||||||    
T  1690196 gcgacaaatttgtgaaaatagggttctggaatccatcagaaattgagaaaattctctaaaatagtatttaatgaataaaagttgtctctta 1690286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 1883546 - 1883482
Alignment:
Q  62 ctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaat 126  Q
    |||||||||||| |||||  ||||| || |||| |||||||||| |||||||| |||| ||||||    
T  1883546 ctaaacctagattgaaaagaaacaagtttgcaaacgacaaacttgtgaaaataaggttccagaat 1883482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 3778831 - 3778890
Alignment:
Q  147 tctctaaaatattattgaatgaataaaacttgt--ctctta-actacaaccgttaagctt 203  Q
    |||||||||||||||||| ||||||||| || |  |||||| ||||||||||||||||||    
T  3778831 tctctaaaatattattgattgaataaaagttattcctcttagactacaaccgttaagctt 3778890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 4133287 - 4133359
Alignment:
Q  43 aagcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatag 115  Q
    ||||||||  |||||  |||||||| ||||| ||| | |||||||||  |||||||||||||| |||||||||    
T  4133287 aagcgtaggctagcaaatgctaaacttagattgaagatgaacaaattttcaagcgacaaacttgtgaaaatag 4133359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 33615538 - 33615612
Alignment:
Q  64 aaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaatt 138  Q
    ||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  33615538 aaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaatt 33615612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 29340830 - 29340895
Alignment:
Q  53 tagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||| |||||||||||||||||||| ||||| || ||||||||||||||| |||||||||||||    
T  29340830 tagcaggcgctaaacctagatagaaaaa-aacaagtttgcaagcgacaaacttgtgaaaatagggtt 29340895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 203
Target Start/End: Complemental strand, 1127312 - 1127169
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatatta 160  Q
    |||||||||||||  ||||  ||||| || |||||||||||| || ||||||||| ||||| |||| || || |||||        ||||||||||| ||    
T  1127312 gctaaacctagattaaaaagaaacaagtttgcaagcgacaaatttgtgaaaatagtgtttcggaatacaccaaaaattgagaaaactctctaaaataata 1127213  T
Q  161 ttgaatgaataaaacttgtctctta-actacaaccgttaagctt 203  Q
    |||||||||||||| |||| ||||| ||||||||  ||||||||    
T  1127212 ttgaatgaataaaaattgtatcttagactacaactattaagctt 1127169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 3536091 - 3536034
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| |||||| || ||||||||||||||| |||||||||||||    
T  3536091 gctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 3536034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 32361340 - 32361283
Alignment:
Q  147 tctctaaaatattattgaatgaataaaacttgtctcttaa-ctacaaccgttaagctt 203  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||  ||||||||    
T  32361340 tctctaaaatattattgaatgaataaaagttgtctcttaagctacaacttttaagctt 32361283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 3542302 - 3542245
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| |||||| || | ||||||||||||| |||||||||||||    
T  3542302 gctaaacctagatagaaaa-gaacaagtttgtaagcgacaaacttgtgaaaatagggtt 3542245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 30052260 - 30052207
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatag 115  Q
    ||||||||||||||||||| |||||| || ||||||||||||||| |||||||||    
T  30052260 gctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatag 30052207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 185
Target Start/End: Original strand, 24443113 - 24443226
Alignment:
Q  72 atagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatattattgaatgaata 171  Q
    ||||||||||||||   | ||||||||||||||||| ||||||||||| ||||||  | || |||||        |||||  ||||||||||||||||||    
T  24443113 atagaaaaagaacaggcttgcaagcgacaaacttataaaaatagggttccagaatcaaccagaaattaagaaaactctctgcaatattattgaatgaata 24443212  T
Q  172 aaacttgtctctta 185  Q
    ||| || |||||||    
T  24443213 aaagttatctctta 24443226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 185
Target Start/End: Complemental strand, 11658988 - 11658865
Alignment:
Q  62 ctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaatt-nnnnnnnttctctaaaatatta 160  Q
    |||||||||||| ||||| ||||||||| |||||||| |||||| ||||||||| ||||  |||| || || |||||         ||||||||||||||    
T  11658988 ctaaacctagattgaaaa-gaacaaatttgcaagcgataaacttgtgaaaatagagttttggaatccaccaaaaattgagaaaaactctctaaaatatta 11658890  T
Q  161 ttgaatgaataaaacttgtctctta 185  Q
    |||| ||||||||| || |||||||    
T  11658889 ttgattgaataaaagttttctctta 11658865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 27822149 - 27822207
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    |||||||||| |||||||| |||||| ||  |||||||||||||| |||||| ||||||    
T  27822149 gctaaacctaaatagaaaaggaacaagttttcaagcgacaaacttgtgaaaacagggtt 27822207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 30049973 - 30049920
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatag 115  Q
    |||||||||| |||||||| |||||| || ||||||||||||||| |||||||||    
T  30049973 gctaaacctatatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatag 30049920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 3814500 - 3814553
Alignment:
Q  151 taaaatattattgaatgaataaaacttgtctctta-actacaaccgttaagctt 203  Q
    ||||||||||||||||||||| || |||||||||| |||||||  |||||||||    
T  3814500 taaaatattattgaatgaatacaaattgtctcttagactacaattgttaagctt 3814553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 22440933 - 22440851
Alignment:
Q  43 aagcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaat 126  Q
    ||||||||  ||||| ||||||||||||||||||||| |||||  |||||||||||||||||||||| ||||||||| ||||||    
T  22440933 aagcgtaggctagcaagtgctaaacctagatagaaaa-gaacatgttcgcaagcgacaaacttatgataatagggttccagaat 22440851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 18252472 - 18252416
Alignment:
Q  63 taaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    |||||||||||||||| ||||||| || ||||||||||||| | |||||||||||||    
T  18252472 taaacctagatagaaatagaacaagtttgcaagcgacaaacctgtgaaaatagggtt 18252416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 21849000 - 21849054
Alignment:
Q  64 aaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    |||||||||||||||| |||||| || ||||||||||||||| |||||||||||||    
T  21849000 aaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 21849054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 40778818 - 40778875
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| |||||| || ||||||||||||||| | |||||||||||    
T  40778818 gctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtaaaaatagggtt 40778875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 19497350 - 19497393
Alignment:
Q  76 aaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||| || ||||||||||||||| |||||||||||||    
T  19497350 aaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 19497393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 26140401 - 26140343
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    |||||| |||||| |||| | |||||  | |||||||||||||||||||||||||||||    
T  26140401 gctaaatctagattgaaagaaaacaagattgcaagcgacaaacttatgaaaatagggtt 26140343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 8456392 - 8456465
Alignment:
Q  43 aagcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagg 116  Q
    ||||||||  ||||| | ||||||||||||| |||||  ||||| |||||||||||| ||||| | ||||||||    
T  8456392 aagcgtagggtagcaagcgctaaacctagattgaaaagaaacaagttcgcaagcgacgaacttgtaaaaatagg 8456465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 15129465 - 15129383
Alignment:
Q  43 aagcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaat 126  Q
    ||||||||  ||||| | ||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| ||||||    
T  15129465 aagcgtaggctagcaagcgctaaacctagatagaaaa-gaacaagttcgcaagcgacaaacttgtgaaaatagggttccagaat 15129383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 61 - 203
Target Start/End: Complemental strand, 33051676 - 33051533
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatatta 160  Q
    |||||||||| || |||||||||||| || ||||||||||||||| |||||||||||||   |||| ||  | |||||        ||||||||||||||    
T  33051676 gctaaacctaaattgaaaaagaacaagtttgcaagcgacaaacttttgaaaatagggttctggaatccactagaaattgagaaaactctctaaaatatta 33051577  T
Q  161 ttgaatgaataaaacttgtctctta-actacaaccgttaagctt 203  Q
    ||||||||||| || |||||||||| |||||||  |||||||||    
T  33051576 ttgaatgaatataagttgtctcttagactacaattgttaagctt 33051533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 23457704 - 23457591
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatatta 160  Q
    ||||||||||||| |||||  ||||| || ||||||||||||||| ||||||||||||| | |||| || || |||||        ||||||||||||||    
T  23457704 gctaaacctagattgaaaataaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccaaaaattgagaaaactctctaaaatatta 23457605  T
Q  161 ttgaatgaataaaa 174  Q
    ||||||||||||||    
T  23457604 ttgaatgaataaaa 23457591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 199
Target Start/End: Complemental strand, 21772432 - 21772293
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctc-taaaatatt 159  Q
    ||||||| ||||| |||||| ||||| || ||||||||||||||||||||||||||||| | |||| ||||| |||||        |||| | |||||||    
T  21772432 gctaaacttagattgaaaaa-aacaagtttgcaagcgacaaacttatgaaaatagggttcctgaatccatcacaaattgagaaaactctcttgaaatatt 21772334  T
Q  160 attgaatgaataaaacttgtctcttaa-ctacaaccgttaa 199  Q
    |||||| |||||||| || |||||||| ||||||| |||||    
T  21772333 attgaacgaataaaagttatctcttaagctacaactgttaa 21772293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 203
Target Start/End: Original strand, 5171616 - 5171759
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatatta 160  Q
    |||||| |||||| |||||   |||| || ||||||||||||||| | |||||||||||  ||||| ||  | |||||        ||||||||||||||    
T  5171616 gctaaatctagattgaaaagagacaagtttgcaagcgacaaacttgtaaaaatagggttcaagaatccactagaaattgagaaaactctctaaaatatta 5171715  T
Q  161 ttgaatgaataaaacttgtctctta-actacaaccgttaagctt 203  Q
    || ||||||||||| |||||||||| |||||||| |||||||||    
T  5171716 tttaatgaataaaaattgtctcttagactacaactgttaagctt 5171759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 27952350 - 27952407
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| |||||| || ||||||||||||||| |||||||||||||    
T  27952350 gctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 27952407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 27956186 - 27956243
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||||    
T  27956186 gctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacctatgaaaatagggtt 27956243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 1218403 - 1218451
Alignment:
Q  146 ttctctaaaatattattgaatgaataaaacttgtctctta-actacaac 193  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  1218403 ttctctaaaatattattgaatgaataaaagttgtctcttatactacaac 1218451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 203
Target Start/End: Original strand, 32163804 - 32163945
Alignment:
Q  63 taaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnn-ttctctaaaatattat 161  Q
    ||||||||||| |||||  || || || | ||||| ||||||| |||||||| |||||| |||| ||| |||||||        ||||||||||||||||    
T  32163804 taaacctagattgaaaagaaataagtttgtaagcgtcaaacttgtgaaaatatggtttcggaatccatgataaattgagaaaacttctctaaaatattat 32163903  T
Q  162 tgaatgaataaaacttgtctcttaactacaaccgttaagctt 203  Q
    ||||||||||||| ||  |||||| ||| ||| |||||||||    
T  32163904 tgaatgaataaaagtttcctcttagctataactgttaagctt 32163945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 28737981 - 28737911
Alignment:
Q  43 aagcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaata 114  Q
    ||||||||| ||||| ||||||||||||||| | |||||| ||| || ||||||||||||||| ||||||||    
T  28737981 aagcgtagtctagcaagtgctaaacctagattg-aaaagagcaagtttgcaagcgacaaacttttgaaaata 28737911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 22011493 - 22011436
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| |||||| || ||||| ||||||||| |||||||||||||    
T  22011493 gctaaacctagatagaaaa-gaacaagtttgcaagtgacaaacttgtgaaaatagggtt 22011436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 33053388 - 33053350
Alignment:
Q  148 ctctaaaatattattgaatgaataaaacttgtctcttaa 186  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  33053388 ctctaaaatattattgaatgaataaaagttgtctcttaa 33053350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 33655685 - 33655628
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    |||||||||||||||||||| | ||| || ||||||||||||||| |||||||||||||    
T  33655685 gctaaacctagatagaaaaata-caagtttgcaagcgacaaacttgtgaaaatagggtt 33655628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 8294644 - 8294575
Alignment:
Q  53 tagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttca 122  Q
    ||||| ||||||||| ||||||||| |||||||  || ||||||||||||||| | ||||||| ||||||    
T  8294644 tagcaagtgctaaacttagatagaagaagaacacgtttgcaagcgacaaacttgtaaaaatagtgtttca 8294575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 36647368 - 36647292
Alignment:
Q  43 aagcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggttt 120  Q
    ||||||||  ||||| | ||||||||| ||| ||||| |||||| || ||||||||||||||| ||||||||||||||    
T  36647368 aagcgtaggctagcaagcgctaaacctcgattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggttt 36647292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 2156024 - 2155970
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagg 116  Q
    ||||||||||||||||||| |||||| || || |||||||||||| ||||||||||    
T  2156024 gctaaacctagatagaaaa-gaacaagtttgcgagcgacaaacttgtgaaaatagg 2155970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 31634161 - 31634107
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagg 116  Q
    ||||||||||||||||||| |||||| || || |||||||||||| ||||||||||    
T  31634161 gctaaacctagatagaaaa-gaacaagtttgctagcgacaaacttgtgaaaatagg 31634107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 4184960 - 4184922
Alignment:
Q  88 ttcgcaagcgacaaacttatgaaaatagggtttcagaat 126  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  4184960 ttcgcaagcgacaaacttgtgaaaatagggtttcggaat 4184922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 12966519 - 12966477
Alignment:
Q  77 aaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    |||||||||| |||||||||||| ||||| |||||||||||||    
T  12966519 aaaagaacaagttcgcaagcgacgaacttgtgaaaatagggtt 12966477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 31636394 - 31636337
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| |||| | || ||||||||||||||| |||||||| ||||    
T  31636394 gctaaacctagatagaaaa-gaactagtttgcaagcgacaaacttgtgaaaatatggtt 31636337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 1518229 - 1518193
Alignment:
Q  83 acaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    |||| |||||||||||| |||||||||||||||||||    
T  1518229 acaagttcgcaagcgacgaacttatgaaaatagggtt 1518193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 18945994 - 18945905
Alignment:
Q  85 aaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatattattgaatgaataaaa 174  Q
    ||||| ||||||||||||||| ||| || || ||| | ||||||| || |||||       |||||||||||||||||||||||| ||||    
T  18945994 aaatttgcaagcgacaaacttgtgagaacagagttccggaattcaccagaaattaataaaattctctaaaatattattgaatgaacaaaa 18945905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 32162002 - 32162058
Alignment:
Q  63 taaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||| |||||  ||||| || ||||| ||||||||| |||||||||||||    
T  32162002 taaacctagatcgaaaagaaacaagtttgcaagtgacaaacttgtgaaaatagggtt 32162058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 50713771 - 50713651
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatatta 160  Q
    ||||||||||||| |||||   |||| |||||| ||||||||||| ||||||||||||||| |||| || || |||||        |||| |||||||||    
T  50713771 gctaaacctagattgaaaagagacaagttcgcaggcgacaaacttgtgaaaatagggtttcggaatccaccagaaattgagaaaactctcaaaaatatta 50713672  T
Q  161 ttgaatgaataaaacttgtct 181  Q
    |||||||||||||||||||||    
T  50713671 ttgaatgaataaaacttgtct 50713651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 10927250 - 10927128
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatatta 160  Q
    ||||||||||||  |||||||||||| || ||||||||||||||| |||||  |||||| | |||| || || |||||        ||||||||||||||    
T  10927250 gctaaacctagactgaaaaagaacaagtttgcaagcgacaaacttgtgaaa--agggttccggaatccaccagaaattgagaaaactctctaaaatatta 10927153  T
Q  161 ttgaatgaataaaacttgtctctta 185  Q
    || ||||||||||| ||||||||||    
T  10927152 tttaatgaataaaagttgtctctta 10927128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 9031093 - 9030961
Alignment:
Q  43 aagcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaatt-nnn 141  Q
    ||||||||  ||||| || ||||||||| || ||||| ||| || || |||||| | ||||||||||||||||||||  ||||| || ||||||||        
T  9031093 aagcgtaggctagcaagtactaaacctatattgaaaaggaataagtttgcaagcaataaacttatgaaaatagggttgtagaatccaccataaattgaga 9030994  T
Q  142 nnnnttctctaaaatattattgaatgaataaaa 174  Q
        |||||||||||||||||||||||||||||    
T  9030993 aaacttctctaaaatattattgaatgaataaaa 9030961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 8967836 - 8967957
Alignment:
Q  63 taaacctagataga-aaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatattat 161  Q
    |||||||||||||| |||||||||| || ||||  ||||||| ||||||||||||||| |||||| || || |||||        ||||| |||||||||    
T  8967836 taaacctagatagagaaaagaacaagtttgcaaatgacaaacctatgaaaatagggttccagaatccaccaaaaattgtgaaaactctctgaaatattat 8967935  T
Q  162 tgaatgaataaaacttgtctct 183  Q
    ||||||||| |||  |||||||    
T  8967936 tgaatgaatgaaaactgtctct 8967957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 28660759 - 28660835
Alignment:
Q  43 aagcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    |||||||| ||||||   |||||||||||||||| ||  ||||| || ||||||||||||||| |||||||||||||    
T  28660759 aagcgtaggatagcaaacgctaaacctagatagataagaaacaagtttgcaagcgacaaacttgtgaaaatagggtt 28660835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 23987652 - 23987581
Alignment:
Q  43 aagcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaata 114  Q
    ||||||||  ||||| | ||| |||||||||||||||||||||| || |||| |||||||||| ||||||||    
T  23987652 aagcgtagggtagcaagcgctgaacctagatagaaaaagaacaactttgcaaacgacaaacttgtgaaaata 23987581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 13444021 - 13444074
Alignment:
Q  62 ctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagg 116  Q
    |||||||||||||||||| |||||| || ||||||||||||||| ||||||||||    
T  13444021 ctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagg 13444074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 40058135 - 40058199
Alignment:
Q  63 taaacctagatagaaaaagaacaaattcgcaagcgacaaacttatg-aaaatagggtttcagaat 126  Q
    |||||||| ||||||||  || || || |||||||||||||||||| ||||||||||||||||||    
T  40058135 taaacctaaatagaaaagaaataagtttgcaagcgacaaacttatgaaaaatagggtttcagaat 40058199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 8931277 - 8931220
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||| |||||| ||||| || |||||||| |||||| |||||||||||||    
T  8931277 gctaaacctagattgaaaaa-aacaagtttgcaagcgataaacttgtgaaaatagggtt 8931220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 50857476 - 50857533
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| ||| || || | ||||||||||||| |||||||||||||    
T  50857476 gctaaacctagatagaaaa-gaataagtttgtaagcgacaaacttgtgaaaatagggtt 50857533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 10925712 - 10925659
Alignment:
Q  147 tctctaaaatattattgaatgaataaaacttgtctcttaa-ctacaaccgttaa 199  Q
    |||||||||||||||||||||||||||| ||  ||||||| ||||||| |||||    
T  10925712 tctctaaaatattattgaatgaataaaagtttcctcttaagctacaactgttaa 10925659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 2687800 - 2687742
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    |||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||    
T  2687800 gctaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 2687742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 138
Target Start/End: Complemental strand, 24731302 - 24731208
Alignment:
Q  44 agcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaatt 138  Q
    |||||||  ||||| | ||||||||||||| ||||| |||||| || |||||| |||||||| ||||||||| ||||| |||||||||| |||||    
T  24731302 agcgtaggctagcaagcgctaaacctagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaatagagtttcggaattcatcagaaatt 24731208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 16598138 - 16598081
Alignment:
Q  147 tctctaaaatattattgaatgaataaaacttgtctctta-actacaaccgttaagctt 203  Q
    |||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  16598138 tctctaaaatattattgaatgaataaaagttgtctcttagtctacaaccgttaagctt 16598081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 22926680 - 22926737
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| |||||| || ||||||||||||||| |||||||||||||    
T  22926680 gctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 22926737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 42890467 - 42890394
Alignment:
Q  43 aagcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaataggg 117  Q
    ||||||||  ||||| | ||||||||||||||||||| |||||| || ||||||||||||||| |||||||||||    
T  42890467 aagcgtaggctagcaagcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaataggg 42890394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 42891696 - 42891753
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| |||||| || ||||||||||||||| |||||||||||||    
T  42891696 gctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 42891753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 26374942 - 26374845
Alignment:
Q  77 aaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatattattgaatgaataaaa 174  Q
    |||||||||| |||||||||||||||||| | |||||||||||||  ||| || || |||||        |||||||| |||||||||||||||||||    
T  26374942 aaaagaacaagttcgcaagcgacaaacttgtaaaaatagggtttcgaaatccaccagaaattaagaaaactctctaaattattattgaatgaataaaa 26374845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 174
Target Start/End: Original strand, 2609547 - 2609639
Alignment:
Q  82 aacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatattattgaatgaataaaa 174  Q
    ||||| || ||||| ||||||||| ||||||||||||| ||||||||| || |||||        ||||| ||||||||||||||||||||||    
T  2609547 aacaagtttgcaagtgacaaacttgtgaaaatagggttacagaattcaccagaaattgataaagctctctgaaatattattgaatgaataaaa 2609639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 22512078 - 22512135
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||| ||||||| |||||| || ||||||||||||||| |||||||||||||    
T  22512078 gctaaacctaggtagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 22512135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 22519378 - 22519435
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||| ||||||| |||||| || ||||||||||||||| |||||||||||||    
T  22519378 gctaaacctaggtagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 22519435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 22921882 - 22921939
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| ||| || || ||||||||||||||| |||||||||||||    
T  22921882 gctaaacctagatagaaaa-gaataagtttgcaagcgacaaacttgtgaaaatagggtt 22921939  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 23570641 - 23570584
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| |||||| || ||||||||||||||| |||||||| ||||    
T  23570641 gctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaataaggtt 23570584  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 6845393 - 6845336
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| |||||| ||  ||||||| |||||| |||||||||||||    
T  6845393 gctaaacctagatagaaaa-gaacaagtttacaagcgataaacttgtgaaaatagggtt 6845336  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 18468706 - 18468649
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||| ||||||| ||||||  | ||||||||||||||| |||||||||||||    
T  18468706 gctaaacctaggtagaaaa-gaacaagcttgcaagcgacaaacttgtgaaaatagggtt 18468649  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 2189735 - 2189811
Alignment:
Q  43 aagcgtagtatagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggttt 120  Q
    ||||||||  ||||| | ||||||||| ||| ||||| |||||| || ||||||||||||||| |||||||| |||||    
T  2189735 aagcgtaggctagcaagcgctaaacctcgattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaataaggttt 2189811  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 14130137 - 14130080
Alignment:
Q  147 tctctaaaatattattgaatgaataaaacttgtctctta-actacaaccgttaagctt 203  Q
    |||| ||||||||||||||||||||||| ||| |||||| |||||||  |||||||||    
T  14130137 tctccaaaatattattgaatgaataaaagttgcctcttagactacaattgttaagctt 14130080  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 16598286 - 16598184
Alignment:
Q  82 aacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatca-taaattnnnnnnnttctctaaaatattattgaatgaataaaacttgtc 180  Q
    ||||| || ||| ||||||||||| ||||||||||||| || ||| || || ||||||        |||||||||||||||||||||||||||| ||| |    
T  16598286 aacaagtttgcacgcgacaaacttgtgaaaatagggttccaaaatacaccagtaaattgagaaaactctctaaaatattattgaatgaataaaagttgcc 16598187  T
Q  181 tct 183  Q
    |||    
T  16598186 tct 16598184  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 37189922 - 37189866
Alignment:
Q  62 ctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||| |||||||||||| ||| || || ||||||||||||||| |||||||||||||    
T  37189922 ctaaaactagatagaaaa-gaataagtttgcaagcgacaaacttgtgaaaatagggtt 37189866  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 20400732 - 20400789
Alignment:
Q  147 tctctaaaatattattgaatgaataaaacttgtctctt-aactacaaccgttaagctt 203  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  20400732 tctctaaaatattattgaatgaataaaagttgtctcttaaactacaaccgttaagctt 20400789  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 52708902 - 52708839
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcaga 124  Q
    ||||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||||| ||||    
T  52708902 gctaaacctagatagaaaaagaacaaatttgcaagcgataaacttgtgaaagtagggttccaga 52708839  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 5128974 - 5128909
Alignment:
Q  53 tagcaggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||| ||||||||||||||||||| |||||| || ||||||||||||||| |||||||||||||    
T  5128974 tagcaggcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 5128909  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 43303992 - 43304049
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| |||||| || ||||||||||||||| |||||||||||||    
T  43303992 gctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 43304049  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 43306704 - 43306761
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||||| |||||| || |||||| |||||||| |||||||||||||    
T  43306704 gctaaacctagatagaaaa-gaacaagtttgcaagcaacaaacttgtgaaaatagggtt 43306761  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 1320165 - 1320204
Alignment:
Q  146 ttctctaaaatattattgaatgaataaaacttgtctctta 185  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  1320165 ttctctaaaatattattgaatgaataaaagttatctctta 1320204  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 365639 - 365681
Alignment:
Q  77 aaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    |||| ||||||||| |||||||||||||| |||||||||||||    
T  365639 aaaataacaaattcccaagcgacaaacttgtgaaaatagggtt 365681  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 3063771 - 3063826
Alignment:
Q  63 taaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||||||||||| |||  | || ||||||||||||||| |||||||||||||    
T  3063771 taaacctagatagaaaa-gaaagagtttgcaagcgacaaacttgtgaaaatagggtt 3063826  T

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Target: scaffold0054 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 49362 - 49237
Alignment:
Q  79 aagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatattattgaatgaataaaacttg 178  Q
    |||||||| || ||||||||||||||||||||||||||||| || ||| || |||||||         |||||||||||| ||| ||||||||||| ||     
T  49362 aagaacaagtttgcaagcgacaaacttatgaaaatagggttccaaaatccaccataaataaggaaaactctctaaaatataattaaatgaataaaagtta 49263  T
Q  179 tctctta-actacaaccgttaagctt 203  Q
     |||||| |||||||| |||| ||||    
T  49262 cctcttagactacaactgttatgctt 49237  T

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Target: scaffold0054; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 37768 - 37714
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagg 116  Q
    ||||||||||||| ||||| |||||| || ||||||||||||||||||||||||||    
T  37768 gctaaacctagattgaaaa-gaacaagtttgcaagcgacaaacttatgaaaatagg 37714  T

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Target: scaffold0240 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 174
Target Start/End: Complemental strand, 16106 - 15992
Alignment:
Q  59 gtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggtttcagaattcatcataaattnnnnnnnttctctaaaatat 158  Q
    ||||||||||||||||| |||||||||| || ||||| ||||||| | |||||||||  ||  ||||| || || |||||        ||| ||||||||    
T  16106 gtgctaaacctagatag-aaaagaacaagtttgcaagtgacaaacatctgaaaatagtattatagaatccaccagaaatttagaaaactctataaaatat 16008  T
Q  159 tattgaatgaataaaa 174  Q
    ||||||||||||||||    
T  16007 tattgaatgaataaaa 15992  T

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Target: scaffold0110 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 45310 - 45351
Alignment:
Q  78 aaagaacaaattcgcaagcgacaaacttatgaaaatagggtt 119  Q
    ||||||||| || |||||||||||||||||||||||| ||||    
T  45310 aaagaacaagtttgcaagcgacaaacttatgaaaataaggtt 45351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 46765 - 46816
Alignment:
Q  61 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaat 113  Q
    ||||||||||||||||||| |||||| || ||||||||||||| ||| |||||    
T  46765 gctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacctatcaaaat 46816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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