View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_70 (Length: 265)
Name: NF20094_low_70
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_70 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 15851287 - 15851517
Alignment:
| Q |
18 |
tatagacattaggagtagaaaacctcagacccatttttctttgatccgacgacattnnnnnnngcaataacaattaaccaccatcgttaacaaatttgtc |
117 |
Q |
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| T |
15851287 |
tatagacattaggagtagaaaacctaggacccatttatctttgatccgacgacattaaaaaa-gcaataacgattaaccaccatcgttaacaaatttgtc |
15851385 |
T |
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| Q |
118 |
gcaatttataaactcatcaatgtggtttcctccatgaagcaatagtgtcttattctaaaaaagttaagctactaagtaactccaatggatatgctcttac |
217 |
Q |
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| T |
15851386 |
gcaatttataaactcatcaatgtggtttcctacatgaagcaatagtgtcttattctaaagaagttaagctactaagtaactccattagatatgctcttac |
15851485 |
T |
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| Q |
218 |
agtttatgcaaaatgatgcttgccccattttt |
249 |
Q |
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| T |
15851486 |
agtttatgcaaaatgatgcttgccccattttt |
15851517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 15858340 - 15858417
Alignment:
| Q |
172 |
ctaaaaaagttaagctactaagtaactccaatggatatgctcttacagtttatgcaaaatgatgcttgccccattttt |
249 |
Q |
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| T |
15858340 |
ctaaaaaagttaacctactaagtaactccattggatgtgctcttacagtttatgcaaaatgatgcttgccccattttt |
15858417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 15844205 - 15844279
Alignment:
| Q |
172 |
ctaaaaaagttaagctactaagtaactccaatggatatgctcttacagtttatgcaaaatgatgcttgccccatt |
246 |
Q |
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| T |
15844205 |
ctaaaagagttaagatattaagtgactccaatggacatgctcttacagtttatgcaaaatgatgattgccccatt |
15844279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 15865408 - 15865485
Alignment:
| Q |
172 |
ctaaaaaagttaagctactaagtaactccaatggatatgctcttacagtttatgcaaaatgatgcttgccccattttt |
249 |
Q |
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|||||| ||| |||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
15865408 |
ctaaaagagtaaagctactgaataactccattggatgtgctcttacagtttatgcaaaatgatgcttgcaccattttt |
15865485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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