View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_76 (Length: 252)
Name: NF20094_low_76
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_76 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 11106943 - 11106704
Alignment:
| Q |
13 |
agaatattgcattcgtgttatgatcgatagggaaaatgtagtaacgagtaatgaccccgattataataaggaagatgatgaaagaggaagagattattgc |
112 |
Q |
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| T |
11106943 |
agaatattgcattcgtgttatgatcgatagggaaaatgtagtaacgagtaatgaccccgattataataaggaagatgatgaaagaggaagagattattgc |
11106844 |
T |
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| Q |
113 |
gccaagccaaagccaactgtttggacctaacatagcatgtattggttcatcggatggatttggcttgagccatagagtttggggatgaattggagtatct |
212 |
Q |
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| T |
11106843 |
gccaagccaaagccaactgtttggacctaacatagcatgtattggttcatcggatggatttggcttgagccatagagtttggggatgaattggagtatct |
11106744 |
T |
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| Q |
213 |
ggtttaaactctttgtctcttgtgatgtatgcctcaattt |
252 |
Q |
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| T |
11106743 |
ggtttaaactctttgtctcttgtgatgtatgcctcaattt |
11106704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 11593168 - 11592930
Alignment:
| Q |
14 |
gaatattgcattcgtgttatgatcgatagggaaaatgtagtaacgagtaatgaccccgattataataaggaagatgatgaaagaggaagagattattgcg |
113 |
Q |
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| T |
11593168 |
gaatattgcatttgtgttatgatcgatagggaaaatgtagtaacgagtaatgaccccgattataataaggaagatgatgaaagaggatgagattattgcg |
11593069 |
T |
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| Q |
114 |
ccaagccaaagccaactgtttggacctaacatagcatgtattggttcatcggatggatttggcttgagccatagagtttggggatgaattggagtatctg |
213 |
Q |
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| T |
11593068 |
ccaagccaaagctaactgtttggacctaacatagcatgtattggttcatcggatggattgggcttgagccatagagtttggggatgaattggagtatctg |
11592969 |
T |
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| Q |
214 |
gtttaaactctttgtctcttgtgatgtatgcctcaattt |
252 |
Q |
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| T |
11592968 |
gtttaaactctttgtctcttgtgatgtatgcctcaattt |
11592930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 11120097 - 11119858
Alignment:
| Q |
13 |
agaatattgcattcgtgttatgatcgatagggaaaatgtagtaacgagtaatgaccccgattataataaggaagatgatgaaagaggaagagattattgc |
112 |
Q |
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| T |
11120097 |
agaatattttattcgtgttatgatcaatcgggaaaatgtagtatcgagtaatgatcccgattatgataaggaagataatgaaagaagatgagattatagc |
11119998 |
T |
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| Q |
113 |
gccaagccaaagccaactgtttggacctaacatagcatgtattggttcatcggatggatttggcttgagccatagagtttggggatgaattggagtatct |
212 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||| |||| | |||||||||||| | ||||| |||||| |||||||||| ||||| |
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| T |
11119997 |
accaagccaaagccaagtgtttggacctaacatagaatgtattggtgcatctgttggatttggcttaaaccataaagtttgaggatgaattgagctatct |
11119898 |
T |
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| Q |
213 |
ggtttaaactctttgtctcttgtgatgtatgcctcaattt |
252 |
Q |
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| T |
11119897 |
gatttaaactctctgtctcttgtgatgtatgcctcaattt |
11119858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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