View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20094_low_77 (Length: 252)

Name: NF20094_low_77
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20094_low_77
NF20094_low_77
[»] chr2 (4 HSPs)
chr2 (10-234)||(31601076-31601298)
chr2 (142-200)||(37473109-37473167)
chr2 (27-63)||(4961727-4961763)
chr2 (139-223)||(10920291-10920375)
[»] chr7 (7 HSPs)
chr7 (139-223)||(5567517-5567601)
chr7 (139-223)||(45886141-45886225)
chr7 (88-200)||(3773658-3773770)
chr7 (139-200)||(7779663-7779724)
chr7 (142-223)||(33840707-33840788)
chr7 (142-215)||(37578904-37578977)
chr7 (147-200)||(44986281-44986334)
[»] chr1 (9 HSPs)
chr1 (142-233)||(29871663-29871754)
chr1 (139-224)||(13390082-13390167)
chr1 (141-222)||(50427032-50427113)
chr1 (146-200)||(14892357-14892411)
chr1 (118-200)||(25155251-25155333)
chr1 (142-200)||(35937196-35937254)
chr1 (139-200)||(5180702-5180763)
chr1 (150-223)||(28297561-28297634)
chr1 (139-203)||(51421543-51421607)
[»] chr5 (3 HSPs)
chr5 (142-223)||(40517435-40517516)
chr5 (142-200)||(17853659-17853717)
chr5 (142-224)||(22695281-22695363)
[»] chr4 (8 HSPs)
chr4 (139-223)||(7608604-7608688)
chr4 (142-224)||(37348756-37348838)
chr4 (139-223)||(11123244-11123328)
chr4 (139-223)||(44887540-44887624)
chr4 (139-223)||(55827000-55827084)
chr4 (26-169)||(37926188-37926330)
chr4 (142-200)||(44317201-44317259)
chr4 (142-200)||(48459143-48459201)
[»] scaffold0014 (1 HSPs)
scaffold0014 (142-223)||(14523-14604)
[»] chr6 (4 HSPs)
chr6 (142-223)||(3484302-3484383)
chr6 (142-223)||(27534323-27534404)
chr6 (142-223)||(33061985-33062066)
chr6 (139-222)||(9402172-9402255)
[»] chr8 (6 HSPs)
chr8 (139-223)||(17220345-17220429)
chr8 (139-223)||(27932063-27932147)
chr8 (117-200)||(6388919-6389002)
chr8 (139-193)||(34021134-34021188)
chr8 (142-223)||(34301533-34301614)
chr8 (139-223)||(45235698-45235782)
[»] chr3 (3 HSPs)
chr3 (139-203)||(34025607-34025671)
chr3 (142-200)||(39728333-39728391)
chr3 (139-223)||(30616680-30616764)


Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 31601076 - 31601298
Alignment:
Q  10 attatacttggagctaaaaaattacttttatttttattaacaaaaattatccaccgaagagatgaggatgagccgtggatacccgaacccgtcagatata 109  Q
    |||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| |||| |    
T  31601076 attacactcggagctaaaaaaatacttttatttttattaacaaaaattatccaccgaagggatgaagatgagccgcggatacccgaacccgtcggataca 31601175  T
Q  110 aggaagtgatttgatttctgatcctcaccggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctct 209  Q
    |||||||||||| |||||||||||| || |||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||     
T  31601176 aggaagtgatttaatttctgatccttactggatatgaataaggtaacagataagtatatgcaaatagggtatagggacgaagaaggtaaaa-ccatctcc 31601274  T
Q  210 accccgcctcattgtagtgcctaat 234  Q
    | ||||||| |||||| ||||||||    
T  31601275 a-cccgccttattgtaatgcctaat 31601298  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 37473109 - 37473167
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaa 200  Q
    |||| |||||||||||| |||||||||| ||||  ||||||||||||| ||||||||||    
T  37473109 tatgggtagggtaacaggtaagtatatgaaaatcaggtatagggacggggaaggtaaaa 37473167  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 4961727 - 4961763
Alignment:
Q  27 aaaattacttttatttttattaacaaaaattatccac 63  Q
    |||| |||||||||||||||||| |||||||||||||    
T  4961727 aaaaatacttttatttttattaaaaaaaattatccac 4961763  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 10920375 - 10920291
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    ||||||| |||||||||||| ||||||||||  |||||||||| | || || |||| ||||| || || | |||||||| |||||    
T  10920375 ggatatgggtagggtaacaggtaagtatatgagaatagggtatggagatggggaagataaaacccgtccccaccccgccccattg 10920291  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 5567517 - 5567601
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    |||||||||||||||||||| ||||||||||  |||||||||| ||||||| | ||||||||  |||| | |||||||| |||||    
T  5567517 ggatatgagtagggtaacaggtaagtatatgagaatagggtatggggacgggggaggtaaaactcatccccaccccgccccattg 5567601  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 45886141 - 45886225
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    ||||||| |||||||||||| ||||||||||  ||| |||||| | ||||| |||||||||| ||||||| |||||||| |||||    
T  45886141 ggatatgggtagggtaacaggtaagtatatgagaattgggtatggagacggggaaggtaaaacccatctccaccccgccccattg 45886225  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 3773770 - 3773658
Alignment:
Q  88 atacccgaacccgtcagatataaggaagtgatttgatttctgatcctcaccggatatgagtagggtaacagttaagtatatgcaaatagggtatagggac 187  Q
    |||||| ||||||||||  ||| ||| | |||| ||||||| |||| ||| ||||||| ||| |||||||| ||||||||||| | |||| ||| |||||    
T  3773770 atacccaaacccgtcagggatagggatgagattcgatttctcatccccactggatatgggtaaggtaacaggtaagtatatgcgagtaggatatggggac 3773671  T
Q  188 ggagaaggtaaaa 200  Q
    ||  |||||||||    
T  3773670 gggaaaggtaaaa 3773658  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 7779724 - 7779663
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaa 200  Q
    ||||||| |||||||||||| |||||||| |  ||| |||||| ||||||| ||||||||||    
T  7779724 ggatatgggtagggtaacagataagtatacgagaatcgggtatggggacggggaaggtaaaa 7779663  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 33840788 - 33840707
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    |||| |||||||||||| ||||||||||  |||| || || |||| ||||||||||||| || || | |||||||| |||||    
T  33840788 tatgggtagggtaacaggtaagtatatgagaatatggcatggggatggagaaggtaaaacccgtccccaccccgccccattg 33840707  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 37578977 - 37578904
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccg 215  Q
    ||||||||||||||| | ||||||||||  ||| |||||| |||| || ||| |||||||||||| | ||||||    
T  37578977 tatgagtagggtaacgggtaagtatatgataatcgggtatggggatggggaatgtaaaatccatccccaccccg 37578904  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 44986281 - 44986334
Alignment:
Q  147 gtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaa 200  Q
    |||||||||||| ||||||||||  ||| |||||| ||||||| ||||||||||    
T  44986281 gtagggtaacaggtaagtatatgagaatcgggtatggggacggggaaggtaaaa 44986334  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 29871663 - 29871754
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattgtagtgcctaa 233  Q
    ||||||||||||||||  ||||||||||  ||| |||||| | || |||||| ||||||||| |||||||||| |||||||||  |||||||    
T  29871663 tatgagtagggtaacaagtaagtatatgagaatcgggtatggagatggagaatgtaaaatccgtctctaccccacctcattgtcatgcctaa 29871754  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 13390167 - 13390082
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattgt 224  Q
    ||||||| |||||||||| ||||||||||||  ||| |||||| ||||||| |||||||||| || || | |||||||| ||||||    
T  13390167 ggatatgggtagggtaacggttaagtatatgagaatcgggtatggggacggggaaggtaaaacccgtccccaccccgccccattgt 13390082  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 50427032 - 50427113
Alignment:
Q  141 atatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcatt 222  Q
    ||||| |||||||||| | ||||||||||  ||| |||||| |||| ||||||||||||| | ||| | |||||||||||||    
T  50427032 atatgggtagggtaacgggtaagtatatgagaatcgggtatggggatggagaaggtaaaacctatccccaccccgcctcatt 50427113  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 14892411 - 14892357
Alignment:
Q  146 agtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaa 200  Q
    ||||||||||| | ||||||||||  |||||||||| ||||||| ||||||||||    
T  14892411 agtagggtaacgggtaagtatatgagaatagggtatggggacggggaaggtaaaa 14892357  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 25155251 - 25155333
Alignment:
Q  118 atttgatttctgatcctcaccggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaa 200  Q
    ||||||||||| |||| |   |||||||||||||||||| | |||| ||||| || |||||||| ||||||  ||||||||||    
T  25155251 atttgatttctcatccccgttggatatgagtagggtaacggataagcatatgaaagtagggtatggggacgatgaaggtaaaa 25155333  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 35937196 - 35937254
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaa 200  Q
    ||||||| ||||||||| ||||||||||  ||| |||||||||||||| ||| ||||||    
T  35937196 tatgagtggggtaacaggtaagtatatgagaatcgggtatagggacggggaatgtaaaa 35937254  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 5180763 - 5180702
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaa 200  Q
    ||||||| |||||||||  | ||||||||||  ||| |||||||||||||| ||||||||||    
T  5180763 ggatatgggtagggtaatgggtaagtatatgagaatcgggtatagggacggggaaggtaaaa 5180702  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 28297634 - 28297561
Alignment:
Q  150 gggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    ||||||| | ||||||||||  ||| |||||| ||||||| |||||||||| || || | ||||||||||||||    
T  28297634 gggtaacgggtaagtatatgagaatcgggtatggggacggggaaggtaaaacccgtccccaccccgcctcattg 28297561  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 51421607 - 51421543
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatcc 203  Q
    |||||||||||||||||| | ||||||||||  ||| |||||| |||| |  |||||||||||||    
T  51421607 ggatatgagtagggtaacgggtaagtatatgagaatcgggtatggggatgaggaaggtaaaatcc 51421543  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 40517516 - 40517435
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    |||| |||||||||||| ||||||||||  ||| |||||| ||||||| |||||||||| ||||| | |||||||| |||||    
T  40517516 tatgggtagggtaacaggtaagtatatgagaatcgggtatggggacggggaaggtaaaacccatccccaccccgccccattg 40517435  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 17853659 - 17853717
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaa 200  Q
    |||| |||||||||||| ||||||||||  ||| |||||| ||||||| ||||||||||    
T  17853659 tatgggtagggtaacaggtaagtatatgagaatcgggtatggggacggggaaggtaaaa 17853717  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 22695281 - 22695363
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattgt 224  Q
    |||| ||||||||||   ||||||||||  ||| |||||||||||||| |||||||||| || || | |||||||| ||||||    
T  22695281 tatgggtagggtaacgagtaagtatatgagaattgggtatagggacggggaaggtaaaacccgtccccaccccgccccattgt 22695363  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 7608688 - 7608604
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    ||||||| |||||||||||| ||||||||||  ||| |||||| ||||||| |||||||||| || || | |||||||| |||||    
T  7608688 ggatatgggtagggtaacaggtaagtatatgagaatcgggtatggggacggggaaggtaaaacccgtccccaccccgccccattg 7608604  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 37348838 - 37348756
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattgt 224  Q
    |||| |||||||||||| |||||||| |  ||| |||||| ||||||||||| |||||| || || |||||||||| ||||||    
T  37348838 tatgggtagggtaacaggtaagtataagagaatcgggtatggggacggagaatgtaaaacccgtccctaccccgccccattgt 37348756  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 11123244 - 11123328
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    ||||||| |||||||||||| ||||||||||  ||| |||||| || |||| |||||||||| || || | |||||||| |||||    
T  11123244 ggatatgggtagggtaacaggtaagtatatgagaatcgggtatgggaacggggaaggtaaaacccgtccccaccccgccccattg 11123328  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 44887624 - 44887540
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    |||||||  ||||||||||| ||||||||||  ||| ||||||  |||| | |||||||||||||||| | |||||||| |||||    
T  44887624 ggatatggatagggtaacaggtaagtatatgagaatcgggtatgaggacagggaaggtaaaatccatccccaccccgccccattg 44887540  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 55827000 - 55827084
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    ||||||| |||||||||||| ||||||||||  |||  ||||| ||||||| |||||||||| || || | |||||||| |||||    
T  55827000 ggatatgggtagggtaacagataagtatatgagaatccggtatggggacggggaaggtaaaacccgtccccaccccgccccattg 55827084  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 37926330 - 37926188
Alignment:
Q  26 aaaaattacttttatttttattaacaaaaattatccaccgaagagatgaggatgagccgtggatacccgaacccgtcagatataaggaagtgatttgatt 125  Q
    ||||| ||||||||||| | |||| ||||||||||||| |    |||||||||| | || ||||||||||||||||| || |  |||| |  ||| ||||    
T  37926330 aaaaaatacttttatttattttaa-aaaaattatccactgcgaggatgaggatgggtcggggatacccgaacccgtcggaaacgaggatgatattcgatt 37926232  T
Q  126 tctgatcctcaccggatatgagtagggtaacagttaagtatatg 169  Q
    ||| ||||  || ||||||| ||| |||||||| ||||||||||    
T  37926231 tctcatccctactggatatgggtaaggtaacagataagtatatg 37926188  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 44317259 - 44317201
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaa 200  Q
    |||| |||||||||||| ||||||||||  ||| |||||| ||||||| ||||||||||    
T  44317259 tatgggtagggtaacaggtaagtatatgagaatcgggtatggggacggggaaggtaaaa 44317201  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 48459201 - 48459143
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaa 200  Q
    ||||||||||||||| | ||||||||||  ||| |||||| |||| |||||||||||||    
T  48459201 tatgagtagggtaacgggtaagtatatgagaatcgggtatggggatggagaaggtaaaa 48459143  T

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Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 14523 - 14604
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    |||| |||||||||||| ||||||||||  ||| |||||| ||||||| ||| ||||||||| || | |||||||| |||||    
T  14523 tatgggtagggtaacaggtaagtatatgagaatcgggtatggggacggggaatgtaaaatccgtccccaccccgccccattg 14604  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 3484302 - 3484383
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    |||| |||||||||| | ||||||||||  ||| |||||||||||||| |||||||||| || || | |||||||| |||||    
T  3484302 tatgggtagggtaacgggtaagtatatgagaatcgggtatagggacggggaaggtaaaacccgtccccaccccgccccattg 3484383  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 27534404 - 27534323
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    |||| |||||||||| ||||||||||||  ||| |||||| ||||||| |||||||||| || || | |||||||| |||||    
T  27534404 tatgggtagggtaacggttaagtatatgagaatcgggtatggggacggggaaggtaaaacccgtccccaccccgccccattg 27534323  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 33062066 - 33061985
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    |||| |||||||||| | ||||||||||  ||| |||||| ||||||  ||||||||||| |||| |||||||||| |||||    
T  33062066 tatgggtagggtaacgggtaagtatatgagaatcgggtatggggacgaggaaggtaaaattcatccctaccccgccccattg 33061985  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 9402255 - 9402172
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcatt 222  Q
    ||||||| |||||||||| | ||||||| |   | |||||||| |||||||||||||||||| ||||| | |||||||| ||||    
T  9402255 ggatatgggtagggtaacgggtaagtatttaggagtagggtatggggacggagaaggtaaaaaccatccccaccccgccccatt 9402172  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 17220429 - 17220345
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    |||||||  ||||||||| | ||||||||||  ||| |||||| |||||||||||||||||| || || | |||||||| |||||    
T  17220429 ggatatggatagggtaacgggtaagtatatgagaatcgggtatggggacggagaaggtaaaacccgtccccaccccgccccattg 17220345  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 27932147 - 27932063
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    ||||||| |||||||||| | ||||||||||  ||| | |||| ||||||  |||||||||||||||| | |||||||| |||||    
T  27932147 ggatatgggtagggtaacgggtaagtatatgagaatcgcgtatggggacgaggaaggtaaaatccatccccaccccgccccattg 27932063  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 6388919 - 6389002
Alignment:
Q  117 gatttgatttctgatcctcaccggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaa 200  Q
    |||| ||||||| |||| | | ||||||| |||||||||||| ||||||||||  | ||| |||| ||||||| ||||||||||    
T  6388919 gattcgatttctcatccccgctggatatgggtagggtaacaggtaagtatatgagagtagagtatggggacggggaaggtaaaa 6389002  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 34021188 - 34021134
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaa 193  Q
    |||||||||||||||||| | ||||||||||  ||| || |||||||||||||||    
T  34021188 ggatatgagtagggtaacggataagtatatgataatcggatatagggacggagaa 34021134  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 34301533 - 34301614
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    |||| |||||||||||| ||||||||||  ||| |||||| |||| || |||||||||| || || | |||||||| |||||    
T  34301533 tatgggtagggtaacaggtaagtatatgataatcgggtatggggatggggaaggtaaaacccgtccccaccccgccccattg 34301614  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 45235782 - 45235698
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    |||||||||||||||||| | |||||| |||  ||| || ||| ||||||| |||||||||| || || | |||||||| |||||    
T  45235782 ggatatgagtagggtaacgggtaagtacatgagaatcggatatggggacggggaaggtaaaacccgtccccaccccgccccattg 45235698  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 34025671 - 34025607
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatcc 203  Q
    |||||||| ||||||||| | ||||||||||  |||  ||||| |||||||||||||||||||||    
T  34025671 ggatatgaatagggtaacgggtaagtatatgagaatcaggtatggggacggagaaggtaaaatcc 34025607  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 39728391 - 39728333
Alignment:
Q  142 tatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaa 200  Q
    |||| |||||||||||| ||||||||||  ||| |||||| ||||||| ||||||||||    
T  39728391 tatgggtagggtaacaggtaagtatatgagaatcgggtatggggacggggaaggtaaaa 39728333  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 30616680 - 30616764
Alignment:
Q  139 ggatatgagtagggtaacagttaagtatatgcaaatagggtatagggacggagaaggtaaaatccatctctaccccgcctcattg 223  Q
    ||||||| |||||||||||  ||||||||||  |||||||||| |||| || || ||||||| || || | |||||||| |||||    
T  30616680 ggatatgggtagggtaacaagtaagtatatgagaatagggtatggggatggggatggtaaaacccgtccccaccccgccccattg 30616764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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