View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_78 (Length: 251)
Name: NF20094_low_78
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_78 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 32657706 - 32657944
Alignment:
| Q |
1 |
ccacttggaaaagaggaccaacagaaacatcacgagaatcatcactaaatgggtcatattttttctcttcagtcacagctgctttggcagttgatatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32657706 |
ccacttggaaaagaggaccaacagaaacatcacgagaatcatcactaaatgggtcatattttttctcttcagtcacagctgctttggcagttgatatttt |
32657805 |
T |
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| Q |
101 |
cttttttgtcacagctgctttggaagttgattttttcttcttgatcatgacatctggtttgccagttgttttctccataggaattttttctgattccata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
32657806 |
cttttttgtcacagctgctttggaagttgattttttcttcttgatcatgacatctggtttgctagttgttttctccatcggaattttttctgattccata |
32657905 |
T |
|
| Q |
201 |
ccgtgcaactttgcaacagacagccttttactacgtctc |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
32657906 |
ccgtgcaactttgcaacagacagccttttactacgtctc |
32657944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 32631814 - 32632055
Alignment:
| Q |
1 |
ccacttggaaaagaggaccaacagaaacatcacgagaatcatcactaaatgggtcatattttttctcttcagtcacagctgctttggcagttgatatttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32631814 |
ccacttggaaaagaggaccaacagaaacatcacgagaatcatcactaaatgggtcgtattttttctcttcagtcacagctgctttggcagttgatatttt |
32631913 |
T |
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| Q |
101 |
cttttttgtcacagctgctttggaagttgattttttcttcttgatcatgacatctggtttgccagttgttttctccataggaattttttctgattccata |
200 |
Q |
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| T |
32631914 |
cttttttgtcacagctgctttggaagttgattttttcttcttgatcatgacgtctggtttgccagttgttttctccataggacttttttctgattccata |
32632013 |
T |
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| Q |
201 |
ccgtgcaactt---tgcaacagacagccttttactacgtctc |
239 |
Q |
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|| |||||||| || |||||||||||||||||||||||| |
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| T |
32632014 |
ccatgcaacttaagagcgacagacagccttttactacgtctc |
32632055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 32582568 - 32582784
Alignment:
| Q |
1 |
ccacttggaaaagaggaccaacagaaaca------tcacgagaatcatcactaaatgggtcatattttttctcttcagtcacagctgctttggcagttga |
94 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
32582568 |
ccacttggaaaagaggaccaacagaaacaaccttatcacgagaatcatcactaaatgggtcatattttttctcttcagtcccagctgcattggcagttga |
32582667 |
T |
|
| Q |
95 |
tattttcttttttgtcacagctgctttggaagttgattttttcttcttgatcatgacatctggtttgccagttgttttctccataggaattttttctgat |
194 |
Q |
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| ||||||||||| ||||||||||||||| ||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32582668 |
ttttttcttttttctcacagctgctttggtagttggttttttcttgttgatcacgatatctggtttgccagttgttttctccataggacttttttctgat |
32582767 |
T |
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| Q |
195 |
tccataccgtgcaactt |
211 |
Q |
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|||||| |||||||||| |
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| T |
32582768 |
tccatagcgtgcaactt |
32582784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 32600464 - 32600567
Alignment:
| Q |
108 |
gtcacagctgctttggaagttgattttttcttcttgatcatgacatctggtttgccagttgttttctccataggaattttttctgattccataccgtgca |
207 |
Q |
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||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
32600464 |
gtcacagctgcattggcagttgattttttcttcttgatcacgacatctggtttgccagttgttttctccataggacttttttctgatttcataccgtgca |
32600563 |
T |
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| Q |
208 |
actt |
211 |
Q |
| |
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|||| |
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| T |
32600564 |
actt |
32600567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 32600440 - 32600495
Alignment:
| Q |
48 |
aatgggtcatattttttctcttcagtcacagctgctttggcagttgatattttctt |
103 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |
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| T |
32600440 |
aatgggtcatattttttctcttccgtcacagctgcattggcagttgattttttctt |
32600495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 41147636 - 41147702
Alignment:
| Q |
129 |
gattttttcttcttgatcatgacatctggtttgccagttgttttctccataggaattttttctgatt |
195 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||| |||| |||| |||||||||| |
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| T |
41147636 |
gattttttctttttgatcacgacatctggtttgccagttgttttttccagaggacacttttctgatt |
41147702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 25363882 - 25363927
Alignment:
| Q |
116 |
tgctttggaagttgattttttcttcttgatcatgacatctggtttg |
161 |
Q |
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|||||||| ||||||||||||||| | |||||||||||||||||| |
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| T |
25363882 |
tgctttggcagttgattttttcttttcaatcatgacatctggtttg |
25363927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 21890 - 21918
Alignment:
| Q |
1 |
ccacttggaaaagaggaccaacagaaaca |
29 |
Q |
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| T |
21890 |
ccacttggaaaagaggaccaacagaaaca |
21918 |
T |
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