View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_80 (Length: 249)
Name: NF20094_low_80
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_80 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 48893582 - 48893766
Alignment:
| Q |
15 |
cacagacatttttaaaaaggcccacatcatcatctcaattctcaactactacacagtacactactgataaagataaagattcacaaacaaacaaacacat |
114 |
Q |
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| T |
48893582 |
cacagacatttttaaaaaggcccacatcatcatctcaa-------ctactacacagtacactactgata------aagattcacaaacaaacaaacacat |
48893668 |
T |
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| Q |
115 |
ccaacatcctaacacaaacctgtcccaccaaattacagtcaaactactatactaacttagaaaatgggacttaggtcaaactcaatccattttgcatc |
212 |
Q |
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| T |
48893669 |
ccaacatcctaacacaaacctgtcccaccaaattacagtcaaactactatactaacttagaaaatgggacttaggtcaaacacaatccattttgcatc |
48893766 |
T |
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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 24742663 - 24742716
Alignment:
| Q |
93 |
attcacaaacaaacaaacacatccaacatcctaacacaaacctgtcccaccaaa |
146 |
Q |
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| T |
24742663 |
attcacaaacaaacaaacacatctaacatcctaacacaaacctgtcccaccaaa |
24742716 |
T |
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