View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20094_low_83 (Length: 242)

Name: NF20094_low_83
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20094_low_83
NF20094_low_83
[»] chr6 (2 HSPs)
chr6 (3-223)||(7549824-7550044)
chr6 (26-67)||(7549781-7549822)
[»] chr5 (4 HSPs)
chr5 (22-82)||(38958052-38958112)
chr5 (22-84)||(34252706-34252768)
chr5 (23-72)||(39030564-39030613)
chr5 (24-69)||(39030624-39030669)
[»] chr2 (2 HSPs)
chr2 (22-69)||(10459270-10459317)
chr2 (23-69)||(31469075-31469121)
[»] scaffold0126 (1 HSPs)
scaffold0126 (22-83)||(28158-28218)
[»] scaffold0027 (1 HSPs)
scaffold0027 (23-71)||(13176-13224)
[»] chr1 (3 HSPs)
chr1 (23-67)||(3739874-3739918)
chr1 (27-67)||(29855122-29855162)
chr1 (24-82)||(3739805-3739863)
[»] chr8 (2 HSPs)
chr8 (22-60)||(13209977-13210015)
chr8 (22-67)||(8777775-8777820)
[»] chr4 (2 HSPs)
chr4 (23-69)||(55827301-55827347)
chr4 (22-66)||(54235281-54235325)
[»] chr3 (3 HSPs)
chr3 (22-72)||(26914508-26914558)
chr3 (22-67)||(31280161-31280206)
chr3 (26-67)||(46829105-46829146)
[»] chr7 (4 HSPs)
chr7 (27-68)||(3769817-3769858)
chr7 (28-69)||(16866405-16866446)
chr7 (26-65)||(4259368-4259408)
chr7 (23-63)||(16866461-16866501)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 7549824 - 7550044
Alignment:
Q  3 ttcaatttgaaccaaatacgaaccaaatacattaacttttgtacatcaatttttgcttatattttggaactgaggaagtatttccaacatacctttgtag 102  Q
    |||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7549824 ttcaatttgaaccaaatacgaatcaaatatattaacttttgtacaccaatttttgcttatattttggaactgaggaagtatttcctacatacctttgtag 7549923  T
Q  103 cagcaaatgcaaaatcgtggtcagatgaatacattatacatggcaatcacaaactaaagtctatgataatttactcaatcagattcaaagtcttcctgag 202  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7549924 cagcaaatgcaaaatcgtggtccgatgaatacattataaatggcaatcacaaactaaagtctatgataatttactcaatcagattcaaaatcttcctgag 7550023  T
Q  203 actcatgcctaaagtctgact 223  Q
    |||||||||||||||||||||    
T  7550024 actcatgcctaaagtctgact 7550044  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 7549822 - 7549781
Alignment:
Q  26 caaatacattaacttttgtacatcaatttttgcttatatttt 67  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  7549822 caaatacattaacttttgtacaccaatttttgcttatatttt 7549781  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 38958112 - 38958052
Alignment:
Q  22 gaaccaaatacattaacttttgtacatcaatttttgcttatattttggaactgaggaagta 82  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||||||| |||||||||    
T  38958112 gaaccaaatacattaacttttgttaatcaatttttacttatattttggaacggaggaagta 38958052  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 34252768 - 34252706
Alignment:
Q  22 gaaccaaatacattaacttttgtacatcaatttttgcttatattttggaactgaggaagtatt 84  Q
    |||||||||||||||||||||||  | ||||||||||||| ||||||| || |||| ||||||    
T  34252768 gaaccaaatacattaacttttgttgaccaatttttgcttacattttgggacggagggagtatt 34252706  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 39030613 - 39030564
Alignment:
Q  23 aaccaaatacattaacttttgtacatcaatttttgcttatattttggaac 72  Q
    ||||||||||||||||||||||  | ||||||||||||||||||| ||||    
T  39030613 aaccaaatacattaacttttgttgaccaatttttgcttatattttagaac 39030564  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 39030624 - 39030669
Alignment:
Q  24 accaaatacattaacttttgtacatcaatttttgcttatattttgg 69  Q
    |||||||||||||||||||||  |  ||||||||||||||||||||    
T  39030624 accaaatacattaacttttgttgactaatttttgcttatattttgg 39030669  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 10459317 - 10459270
Alignment:
Q  22 gaaccaaatacattaacttttgtacatcaatttttgcttatattttgg 69  Q
    |||||||||||||||||||||||  | |||||||||||||||||||||    
T  10459317 gaaccaaatacattaacttttgttgaccaatttttgcttatattttgg 10459270  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 31469121 - 31469075
Alignment:
Q  23 aaccaaatacattaacttttgtacatcaatttttgcttatattttgg 69  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||    
T  31469121 aaccaaatacattaacttttgttgaccaatttttgcttatattttgg 31469075  T

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Target: scaffold0126 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 28218 - 28158
Alignment:
Q  22 gaaccaaatacattaacttttgtacatcaatttttgcttatattttggaactgaggaagtat 83  Q
    |||||||||||||||||||||||  ||||||||||  ||||||||||| || ||||||||||    
T  28218 gaaccaaatacattaacttttgttaatcaatttttatttatattttgg-acggaggaagtat 28158  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 13224 - 13176
Alignment:
Q  23 aaccaaatacattaacttttgtacatcaatttttgcttatattttggaa 71  Q
    ||||||||||||||||||||||  ||| ||||||||||| |||||||||    
T  13224 aaccaaatacattaacttttgttgatccatttttgcttacattttggaa 13176  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 3739874 - 3739918
Alignment:
Q  23 aaccaaatacattaacttttgtacatcaatttttgcttatatttt 67  Q
    ||||||||||||||||||||||  | |||||||||||||||||||    
T  3739874 aaccaaatacattaacttttgttgaccaatttttgcttatatttt 3739918  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 29855122 - 29855162
Alignment:
Q  27 aaatacattaacttttgtacatcaatttttgcttatatttt 67  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  29855122 aaatacattaacttttgttgatcaatttttgcttatatttt 29855162  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 3739863 - 3739805
Alignment:
Q  24 accaaatacattaacttttgtacatcaatttttgcttatattttggaactgaggaagta 82  Q
    |||||||||||||||||| ||  | ||||||||||||||||||||| || |||| ||||    
T  3739863 accaaatacattaactttcgttgaccaatttttgcttatattttgggacggagggagta 3739805  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 13210015 - 13209977
Alignment:
Q  22 gaaccaaatacattaacttttgtacatcaatttttgctt 60  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  13210015 gaaccaaatacattaacttttgttgatcaatttttgctt 13209977  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 8777820 - 8777775
Alignment:
Q  22 gaaccaaatacattaacttttgtacatcaatttttgcttatatttt 67  Q
    |||||||||| ||||||||||||  ||||||||||| |||||||||    
T  8777820 gaaccaaatatattaacttttgttgatcaatttttgtttatatttt 8777775  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 55827301 - 55827347
Alignment:
Q  23 aaccaaatacattaacttttgtacatcaatttttgcttatattttgg 69  Q
    ||||||||| ||||||||||||  | |||||||||||||||||||||    
T  55827301 aaccaaatatattaacttttgttgaccaatttttgcttatattttgg 55827347  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 54235281 - 54235325
Alignment:
Q  22 gaaccaaatacattaacttttgtacatcaatttttgcttatattt 66  Q
    |||||||||||||||||||||||  | ||||||||| ||||||||    
T  54235281 gaaccaaatacattaacttttgttgagcaatttttgtttatattt 54235325  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 26914508 - 26914558
Alignment:
Q  22 gaaccaaatacattaacttttgtacatcaatttttgcttatattttggaac 72  Q
    |||||| ||||||||| ||||||  ||||||||||||||| ||||||||||    
T  26914508 gaaccacatacattaatttttgttgatcaatttttgcttacattttggaac 26914558  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 31280206 - 31280161
Alignment:
Q  22 gaaccaaatacattaacttttgtacatcaatttttgcttatatttt 67  Q
    |||||||||||||||| ||||||  |||||||||| ||||||||||    
T  31280206 gaaccaaatacattaaattttgttgatcaatttttacttatatttt 31280161  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 46829105 - 46829146
Alignment:
Q  26 caaatacattaacttttgtacatcaatttttgcttatatttt 67  Q
    |||||||||||||||||||  | |||||||||||||||||||    
T  46829105 caaatacattaacttttgttgaccaatttttgcttatatttt 46829146  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 3769817 - 3769858
Alignment:
Q  27 aaatacattaacttttgtacatcaatttttgcttatattttg 68  Q
    ||||||||||||||||||| ||||||||||  ||||||||||    
T  3769817 aaatacattaacttttgtatatcaatttttatttatattttg 3769858  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 16866446 - 16866405
Alignment:
Q  28 aatacattaacttttgtacatcaatttttgcttatattttgg 69  Q
    ||||||||||||||| |  |||||||||||||||||||||||    
T  16866446 aatacattaacttttattgatcaatttttgcttatattttgg 16866405  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 4259368 - 4259408
Alignment:
Q  26 caaatacattaacttttg-tacatcaatttttgcttatatt 65  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  4259368 caaatacattaacttttgttagatcaatttttgcttatatt 4259408  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 16866461 - 16866501
Alignment:
Q  23 aaccaaatacattaacttttgtacatcaatttttgcttata 63  Q
    ||||||||||||||||||||||  | |||||||||||||||    
T  16866461 aaccaaatacattaacttttgttgaccaatttttgcttata 16866501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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