View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20094_low_84 (Length: 241)

Name: NF20094_low_84
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20094_low_84
NF20094_low_84
[»] chr6 (3 HSPs)
chr6 (25-222)||(7549847-7550044)
chr6 (2-66)||(7549781-7549845)
chr6 (19-68)||(31323818-31323867)
[»] chr5 (4 HSPs)
chr5 (5-81)||(38958052-38958130)
chr5 (19-83)||(34252706-34252770)
chr5 (22-71)||(39030564-39030613)
chr5 (5-68)||(39030604-39030669)
[»] chr2 (6 HSPs)
chr2 (19-68)||(10459270-10459319)
chr2 (22-68)||(31469075-31469121)
chr2 (5-67)||(944776-944840)
chr2 (19-84)||(15660708-15660773)
chr2 (19-68)||(16180492-16180541)
chr2 (5-74)||(43398879-43398950)
[»] scaffold0126 (1 HSPs)
scaffold0126 (19-82)||(28158-28220)
[»] scaffold0027 (1 HSPs)
scaffold0027 (22-70)||(13176-13224)
[»] chr8 (3 HSPs)
chr8 (19-59)||(13209977-13210017)
chr8 (19-66)||(8777775-8777822)
chr8 (19-67)||(29111016-29111064)
[»] chr3 (5 HSPs)
chr3 (19-71)||(26914506-26914558)
chr3 (19-66)||(31280161-31280208)
chr3 (5-67)||(32221511-32221575)
chr3 (25-66)||(46829105-46829146)
chr3 (19-71)||(40905803-40905855)
[»] chr1 (3 HSPs)
chr1 (22-66)||(3739874-3739918)
chr1 (26-66)||(29855122-29855162)
chr1 (5-81)||(3739805-3739883)
[»] chr7 (4 HSPs)
chr7 (5-68)||(16866405-16866470)
chr7 (26-67)||(3769817-3769858)
chr7 (25-64)||(4259368-4259408)
chr7 (22-62)||(16866461-16866501)
[»] chr4 (2 HSPs)
chr4 (19-65)||(54235279-54235325)
chr4 (22-68)||(55827301-55827347)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 7549847 - 7550044
Alignment:
Q  25 caaatacattaacttttgtacatcaatttttgcttatattttggaactgaggaagtatttccaacatacctttgtagcagcaaatgcaaaatcgtggtca 124  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  7549847 caaatatattaacttttgtacaccaatttttgcttatattttggaactgaggaagtatttcctacatacctttgtagcagcaaatgcaaaatcgtggtcc 7549946  T
Q  125 gatgaatacattatacatggcaatcacaaactaaagtctatgataatttactcaatcagattcaaagtcttcctgagactcatgcctaaagtctgact 222  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7549947 gatgaatacattataaatggcaatcacaaactaaagtctatgataatttactcaatcagattcaaaatcttcctgagactcatgcctaaagtctgact 7550044  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 7549845 - 7549781
Alignment:
Q  2 ttcgtatttggttcaaattgaaccaaatacattaacttttgtacatcaatttttgcttatatttt 66  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  7549845 ttcgtatttggttcaaattgaatcaaatacattaacttttgtacaccaatttttgcttatatttt 7549781  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 31323867 - 31323818
Alignment:
Q  19 ttgaaccaaatacattaacttttgtacatcaatttttgcttatattttgg 68  Q
    |||||| ||||||||||||||||||  | ||||||||||||| |||||||    
T  31323867 ttgaacaaaatacattaacttttgttgaccaatttttgcttacattttgg 31323818  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 38958130 - 38958052
Alignment:
Q  5 gtatttggttcaaa--ttgaaccaaatacattaacttttgtacatcaatttttgcttatattttggaactgaggaagta 81  Q
    ||||||||| ||||  |||||||||||||||||||||||||  |||||||||| ||||||||||||||| |||||||||    
T  38958130 gtatttggtacaaaatttgaaccaaatacattaacttttgttaatcaatttttacttatattttggaacggaggaagta 38958052  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 34252770 - 34252706
Alignment:
Q  19 ttgaaccaaatacattaacttttgtacatcaatttttgcttatattttggaactgaggaagtatt 83  Q
    |||||||||||||||||||||||||  | ||||||||||||| ||||||| || |||| ||||||    
T  34252770 ttgaaccaaatacattaacttttgttgaccaatttttgcttacattttgggacggagggagtatt 34252706  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 39030613 - 39030564
Alignment:
Q  22 aaccaaatacattaacttttgtacatcaatttttgcttatattttggaac 71  Q
    ||||||||||||||||||||||  | ||||||||||||||||||| ||||    
T  39030613 aaccaaatacattaacttttgttgaccaatttttgcttatattttagaac 39030564  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 39030604 - 39030669
Alignment:
Q  5 gtatttggttcaaa--ttgaaccaaatacattaacttttgtacatcaatttttgcttatattttgg 68  Q
    |||||||||| |||  ||| |||||||||||||||||||||  |  ||||||||||||||||||||    
T  39030604 gtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgcttatattttgg 39030669  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 10459319 - 10459270
Alignment:
Q  19 ttgaaccaaatacattaacttttgtacatcaatttttgcttatattttgg 68  Q
    |||||||||||||||||||||||||  | |||||||||||||||||||||    
T  10459319 ttgaaccaaatacattaacttttgttgaccaatttttgcttatattttgg 10459270  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 31469121 - 31469075
Alignment:
Q  22 aaccaaatacattaacttttgtacatcaatttttgcttatattttgg 68  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||    
T  31469121 aaccaaatacattaacttttgttgaccaatttttgcttatattttgg 31469075  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 944840 - 944776
Alignment:
Q  5 gtatttggttcaaatt--gaaccaaatacattaacttttgtacatcaatttttgcttatattttg 67  Q
    ||||||||| ||||||  |||| |||||||||||||||| |  ||| ||||||||||||||||||    
T  944840 gtatttggtacaaattttgaactaaatacattaacttttattgatcgatttttgcttatattttg 944776  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 15660708 - 15660773
Alignment:
Q  19 ttgaaccaaatacattaacttttgtacatcaatttttgcttatattttggaactgaggaagtattt 84  Q
    ||||| |||||||||||| || |||  ||||||||||||||||||||| | ||||| | |||||||    
T  15660708 ttgaatcaaatacattaatttgtgttgatcaatttttgcttatattttaggactgatggagtattt 15660773  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 16180492 - 16180541
Alignment:
Q  19 ttgaaccaaatacattaacttttgtacatcaatttttgcttatattttgg 68  Q
    |||||||||||||||||||||||||  | ||| |||| ||||||||||||    
T  16180492 ttgaaccaaatacattaacttttgttgaccaaattttacttatattttgg 16180541  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 43398879 - 43398950
Alignment:
Q  5 gtatttggttcaaatt--gaaccaaatacattaacttttgtacatcaatttttgcttatattttggaactga 74  Q
    ||||||||| ||||||  |||||||||||||||||||||||  |  |||||||| ||| ||||||| |||||    
T  43398879 gtatttggtacaaattttgaaccaaatacattaacttttgttaacaaatttttgtttagattttgggactga 43398950  T

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Target: scaffold0126 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 28220 - 28158
Alignment:
Q  19 ttgaaccaaatacattaacttttgtacatcaatttttgcttatattttggaactgaggaagtat 82  Q
    |||||||||||||||||||||||||  ||||||||||  ||||||||||| || ||||||||||    
T  28220 ttgaaccaaatacattaacttttgttaatcaatttttatttatattttgg-acggaggaagtat 28158  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 13224 - 13176
Alignment:
Q  22 aaccaaatacattaacttttgtacatcaatttttgcttatattttggaa 70  Q
    ||||||||||||||||||||||  ||| ||||||||||| |||||||||    
T  13224 aaccaaatacattaacttttgttgatccatttttgcttacattttggaa 13176  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 13210017 - 13209977
Alignment:
Q  19 ttgaaccaaatacattaacttttgtacatcaatttttgctt 59  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  13210017 ttgaaccaaatacattaacttttgttgatcaatttttgctt 13209977  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 8777822 - 8777775
Alignment:
Q  19 ttgaaccaaatacattaacttttgtacatcaatttttgcttatatttt 66  Q
    |||||||||||| ||||||||||||  ||||||||||| |||||||||    
T  8777822 ttgaaccaaatatattaacttttgttgatcaatttttgtttatatttt 8777775  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 29111016 - 29111064
Alignment:
Q  19 ttgaaccaaatacattaacttttgtacatcaatttttgcttatattttg 67  Q
    |||||||||||||||||| ||| ||  ||||||||||| ||||||||||    
T  29111016 ttgaaccaaatacattaagtttcgttgatcaatttttgtttatattttg 29111064  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 26914506 - 26914558
Alignment:
Q  19 ttgaaccaaatacattaacttttgtacatcaatttttgcttatattttggaac 71  Q
    |||||||| ||||||||| ||||||  ||||||||||||||| ||||||||||    
T  26914506 ttgaaccacatacattaatttttgttgatcaatttttgcttacattttggaac 26914558  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 31280208 - 31280161
Alignment:
Q  19 ttgaaccaaatacattaacttttgtacatcaatttttgcttatatttt 66  Q
    |||||||||||||||||| ||||||  |||||||||| ||||||||||    
T  31280208 ttgaaccaaatacattaaattttgttgatcaatttttacttatatttt 31280161  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 32221511 - 32221575
Alignment:
Q  5 gtatttggttcaaatt--gaaccaaatacattaacttttgtacatcaatttttgcttatattttg 67  Q
    ||||||||| ||||||  |||||||||||||||||||||||  |  |||||||||||| ||||||    
T  32221511 gtatttggtacaaattttgaaccaaatacattaacttttgttgactaatttttgcttacattttg 32221575  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 46829105 - 46829146
Alignment:
Q  25 caaatacattaacttttgtacatcaatttttgcttatatttt 66  Q
    |||||||||||||||||||  | |||||||||||||||||||    
T  46829105 caaatacattaacttttgttgaccaatttttgcttatatttt 46829146  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 40905855 - 40905803
Alignment:
Q  19 ttgaaccaaatacattaacttttgtacatcaatttttgcttatattttggaac 71  Q
    |||||||||||| ||||||||||||  | ||||||||||||| ||||| ||||    
T  40905855 ttgaaccaaataaattaacttttgttgaccaatttttgcttacattttagaac 40905803  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 3739874 - 3739918
Alignment:
Q  22 aaccaaatacattaacttttgtacatcaatttttgcttatatttt 66  Q
    ||||||||||||||||||||||  | |||||||||||||||||||    
T  3739874 aaccaaatacattaacttttgttgaccaatttttgcttatatttt 3739918  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 29855122 - 29855162
Alignment:
Q  26 aaatacattaacttttgtacatcaatttttgcttatatttt 66  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  29855122 aaatacattaacttttgttgatcaatttttgcttatatttt 29855162  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 3739883 - 3739805
Alignment:
Q  5 gtatttggttcaaa--ttgaaccaaatacattaacttttgtacatcaatttttgcttatattttggaactgaggaagta 81  Q
    |||||||||| |||  ||| |||||||||||||||||| ||  | ||||||||||||||||||||| || |||| ||||    
T  3739883 gtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacggagggagta 3739805  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 16866470 - 16866405
Alignment:
Q  5 gtatttggttcaaa--ttgaaccaaatacattaacttttgtacatcaatttttgcttatattttgg 68  Q
    |||||||||| |||  ||| ||| ||||||||||||||| |  |||||||||||||||||||||||    
T  16866470 gtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatattttgg 16866405  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 3769817 - 3769858
Alignment:
Q  26 aaatacattaacttttgtacatcaatttttgcttatattttg 67  Q
    ||||||||||||||||||| ||||||||||  ||||||||||    
T  3769817 aaatacattaacttttgtatatcaatttttatttatattttg 3769858  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 4259368 - 4259408
Alignment:
Q  25 caaatacattaacttttg-tacatcaatttttgcttatatt 64  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  4259368 caaatacattaacttttgttagatcaatttttgcttatatt 4259408  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 16866461 - 16866501
Alignment:
Q  22 aaccaaatacattaacttttgtacatcaatttttgcttata 62  Q
    ||||||||||||||||||||||  | |||||||||||||||    
T  16866461 aaccaaatacattaacttttgttgaccaatttttgcttata 16866501  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 54235279 - 54235325
Alignment:
Q  19 ttgaaccaaatacattaacttttgtacatcaatttttgcttatattt 65  Q
    |||||||||||||||||||||||||  | ||||||||| ||||||||    
T  54235279 ttgaaccaaatacattaacttttgttgagcaatttttgtttatattt 54235325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 55827301 - 55827347
Alignment:
Q  22 aaccaaatacattaacttttgtacatcaatttttgcttatattttgg 68  Q
    ||||||||| ||||||||||||  | |||||||||||||||||||||    
T  55827301 aaccaaatatattaacttttgttgaccaatttttgcttatattttgg 55827347  T

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