View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_85 (Length: 241)
Name: NF20094_low_85
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_85 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 22846803 - 22847035
Alignment:
| Q |
1 |
caaacaatgaatatgaattatttcagtttggtacaatttcattttacacaatcacgtttagcaacagctttctcttgcttgaatgagaggattagaaatc |
100 |
Q |
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| T |
22846803 |
caaacaatgaatatgaattatttcagtttggtataatttcattttacacaatcacgtttagcaacagctttctcttgcttgaatgagaggattagaaatc |
22846902 |
T |
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| Q |
101 |
ttccctattacaaatagtatcacctatata---------------tattataataattggcaaaactatttcatatatatttccaatcctctaaataaga |
185 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22846903 |
ttccctattacaaatagtatcacctatatatatatatatatatattataataataattggcaaaactatttcatatatatttccaatcctctaaataaga |
22847002 |
T |
|
| Q |
186 |
aaatgtataaaaagcctgaaaataacaaaggca |
218 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
22847003 |
aaatgtataaaaagcctgaaagtaacaaaggca |
22847035 |
T |
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