View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20094_low_87 (Length: 240)
Name: NF20094_low_87
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_87 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42071478 - 42071254
Alignment:
| Q |
1 |
ataacgagggtatccttgattactccaaaacaaaattatttagttcttaaacttattatataagttt-nnnnnnnntaaaattgacccactcnnnnnnnt |
99 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | |
|
|
| T |
42071478 |
ataacgggggtatccttgattactccaaaacaaaattatttagttcttaaacttattatataagtttaaaaaaaaataaaattggcccactcaaaaaaat |
42071379 |
T |
|
| Q |
100 |
tactctaacttcaccattgtatttacaaatcctattccttatagaatgataacaataattnnnnnnnnnnctttactagaattaataatgagagaagtaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42071378 |
tactctaacttcaccattgtatttacaaatcctattccttatagaatgataacaataattaaaaaaaaaactttactagaattaataatgagagaagtaa |
42071279 |
T |
|
| Q |
200 |
agggtaacctgcaatgggaagtttg |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42071278 |
agggtaacctgcaatgggaagtttg |
42071254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 42079513 - 42079480
Alignment:
| Q |
191 |
gagaagtaaagggtaacctgcaatgggaagtttg |
224 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
42079513 |
gagaagtaaagggtaacctgcaatggcaagtttg |
42079480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University