View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_88 (Length: 239)
Name: NF20094_low_88
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_88 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 2002502 - 2002720
Alignment:
| Q |
17 |
catcgatccatcaaataaaatgaacaaatacaaattatttaaaaccaaattaaaataaggattggtacaaagtttcactgataattcctagtnnnnnnng |
116 |
Q |
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| T |
2002502 |
catcgatccatcaaataaaataaacaaatacaaattatttaaaaccaatttaaaataaggattggtacaaagtttcactgataattcctagtaaaaaaag |
2002601 |
T |
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| Q |
117 |
gatttatattgcagctgtttgcatggtgtaatttgttcaaaatataatgttcattaaatgtactttggttatgacctattgagcacatatacttcagtgt |
216 |
Q |
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| T |
2002602 |
gatttatattgcagctgtttgcatggtgtaatttgttcaaaatataatgttcattaaatgtactttggttatgacctattgagcacatatacttcagtgt |
2002701 |
T |
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| Q |
217 |
ttgtctatattcatgtgcc |
235 |
Q |
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||||||||||||||||||| |
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| T |
2002702 |
ttgtctatattcatgtgcc |
2002720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 89406 - 89464
Alignment:
| Q |
116 |
ggatttatattgcagctgtttgcatggtgtaatttgttcaaaatataatgttcattaaa |
174 |
Q |
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| T |
89406 |
ggatttatattgcagctgtttacatggtgtaatttgttcaaaatataatgttcattaaa |
89464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 90208 - 90262
Alignment:
| Q |
185 |
ttatgacctattgagcacatatacttcagtgtttgtctatattcatgtgccccac |
239 |
Q |
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| T |
90208 |
ttatgacctattgagcacatatacttcagtgtttttctatattcatgtgccccac |
90262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 1980054 - 1980103
Alignment:
| Q |
116 |
ggatttatattgcagctgtttgcatggtgtaatttgttcaaaatataatg |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1980054 |
ggatttatattgcagctgtttgcatggtgtaatttgttcaaaatataatg |
1980103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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