View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20094_low_89 (Length: 239)

Name: NF20094_low_89
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20094_low_89
NF20094_low_89
[»] chr8 (7 HSPs)
chr8 (1-68)||(10044080-10044147)
chr8 (171-221)||(44734356-44734406)
chr8 (176-221)||(44732045-44732090)
chr8 (69-105)||(44732164-44732200)
chr8 (69-105)||(44734477-44734513)
chr8 (67-105)||(30045440-30045478)
chr8 (68-105)||(30049843-30049880)
[»] chr5 (5 HSPs)
chr5 (171-221)||(32798210-32798260)
chr5 (171-221)||(32800522-32800572)
chr5 (68-105)||(32800639-32800676)
chr5 (70-105)||(32798327-32798362)
chr5 (69-105)||(196152-196188)
[»] chr3 (8 HSPs)
chr3 (171-221)||(5353449-5353499)
chr3 (171-221)||(28784717-28784767)
chr3 (171-218)||(48707585-48707632)
chr3 (68-105)||(28784835-28784872)
chr3 (69-105)||(5353344-5353380)
chr3 (68-105)||(36028806-36028843)
chr3 (69-105)||(22361333-22361369)
chr3 (69-105)||(48707483-48707518)
[»] chr2 (5 HSPs)
chr2 (171-221)||(45336463-45336513)
chr2 (171-221)||(45338775-45338825)
chr2 (171-222)||(17649074-17649125)
chr2 (69-105)||(45336580-45336616)
chr2 (69-105)||(45338892-45338928)
[»] chr1 (3 HSPs)
chr1 (171-221)||(9535459-9535509)
chr1 (171-221)||(1550360-1550411)
chr1 (69-105)||(1550478-1550514)
[»] chr7 (4 HSPs)
chr7 (171-221)||(13108714-13108763)
chr7 (171-221)||(13111006-13111056)
chr7 (69-105)||(39949304-39949340)
chr7 (69-105)||(39953696-39953732)
[»] chr4 (4 HSPs)
chr4 (172-221)||(22804815-22804864)
chr4 (68-105)||(22804932-22804969)
chr4 (67-105)||(3946092-3946130)
chr4 (69-105)||(3941693-3941729)
[»] scaffold1453 (1 HSPs)
scaffold1453 (69-105)||(144-180)


Alignment Details
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10044080 - 10044147
Alignment:
Q  1 atcagtaggctcccaacacaatttggtgcaaaacagtgcaaaggcaaccaacaaatatacaagattat 68  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10044080 atcagtaggctcccaacacaatatggtgcaaaacagtgcaaaggcaaccaacaaatatacaagattat 10044147  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 44734406 - 44734356
Alignment:
Q  171 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44734406 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 44734356  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 44732090 - 44732045
Alignment:
Q  176 atgttttgtgaacaaagtactaaaagctaagatactttgatacatt 221  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  44732090 atgttttgtgaaaaaagtactaaaagctaagatactttgatacatt 44732045  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 44732200 - 44732164
Alignment:
Q  69 tgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    |||||||||||||||||||||||||||||||||||||    
T  44732200 tgttagcttttgcaaaggcagcagaagcaataagctc 44732164  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 44734513 - 44734477
Alignment:
Q  69 tgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    |||||||||||||||||||||||||||||||||||||    
T  44734513 tgttagcttttgcaaaggcagcagaagcaataagctc 44734477  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 30045478 - 30045440
Alignment:
Q  67 attgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    |||||||||||||| || |||||||||||||||||||||    
T  30045478 attgttagcttttgtaatggcagcagaagcaataagctc 30045440  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 30049880 - 30049843
Alignment:
Q  68 ttgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    ||||||||||||| || |||||||||||||||||||||    
T  30049880 ttgttagcttttgtaatggcagcagaagcaataagctc 30049843  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 32798260 - 32798210
Alignment:
Q  171 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32798260 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 32798210  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 32800572 - 32800522
Alignment:
Q  171 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32800572 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 32800522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 32800676 - 32800639
Alignment:
Q  68 ttgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32800676 ttgttagcttttgcaaaggcagcagaagcaataagctc 32800639  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 105
Target Start/End: Complemental strand, 32798362 - 32798327
Alignment:
Q  70 gttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    ||||||||||||||||||||||||||||||||||||    
T  32798362 gttagcttttgcaaaggcagcagaagcaataagctc 32798327  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 196152 - 196188
Alignment:
Q  69 tgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    |||||||||||| || |||||||||||||||||||||    
T  196152 tgttagcttttgtaatggcagcagaagcaataagctc 196188  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 5353449 - 5353499
Alignment:
Q  171 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5353449 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 5353499  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 28784767 - 28784717
Alignment:
Q  171 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28784767 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 28784717  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 48707585 - 48707632
Alignment:
Q  171 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatac 218  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48707585 caacaatattttgtgaacaaagtactaaaagctaagatactttgatac 48707632  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 28784872 - 28784835
Alignment:
Q  68 ttgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28784872 ttgttagcttttgcaaaggcagcagaagcaataagctc 28784835  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 5353344 - 5353380
Alignment:
Q  69 tgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    |||||||||||||||||||||||||||||||||||||    
T  5353344 tgttagcttttgcaaaggcagcagaagcaataagctc 5353380  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 36028806 - 36028843
Alignment:
Q  68 ttgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    ||||||||||||| || |||||||||||||||||||||    
T  36028806 ttgttagcttttgtaatggcagcagaagcaataagctc 36028843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 22361369 - 22361333
Alignment:
Q  69 tgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    |||||||||||| || |||||||||||||||||||||    
T  22361369 tgttagcttttgtaatggcagcagaagcaataagctc 22361333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 48707483 - 48707518
Alignment:
Q  69 tgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    |||||||||||||||||||| ||||||||||||||||    
T  48707483 tgttagcttttgcaaaggca-cagaagcaataagctc 48707518  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 45336513 - 45336463
Alignment:
Q  171 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45336513 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 45336463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 45338825 - 45338775
Alignment:
Q  171 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45338825 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 45338775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 17649125 - 17649074
Alignment:
Q  171 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacattt 222  Q
    ||||||||||||||||||||||||  |||| |||||||||||||||||||||    
T  17649125 caacaatgttttgtgaacaaagtaaaaaaaactaagatactttgatacattt 17649074  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 45336616 - 45336580
Alignment:
Q  69 tgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    |||||||||||||||||||||||||||||||||||||    
T  45336616 tgttagcttttgcaaaggcagcagaagcaataagctc 45336580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 45338928 - 45338892
Alignment:
Q  69 tgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    |||||||||||||||||||||||||||||||||||||    
T  45338928 tgttagcttttgcaaaggcagcagaagcaataagctc 45338892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 9535509 - 9535459
Alignment:
Q  171 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9535509 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 9535459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 1550411 - 1550360
Alignment:
Q  171 caacaatgttttgtgaacaaagtact-aaaagctaagatactttgatacatt 221  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1550411 caacaatgttttgtgaacaaagtactaaaaagctaagatactttgatacatt 1550360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 1550514 - 1550478
Alignment:
Q  69 tgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    |||||||||||||||||||||||||||||||||||||    
T  1550514 tgttagcttttgcaaaggcagcagaagcaataagctc 1550478  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 13108714 - 13108763
Alignment:
Q  171 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 221  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  13108714 caacaatgttttgtgaacaaagtaa-aaaagctaagatactttgatacatt 13108763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 13111006 - 13111056
Alignment:
Q  171 caacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 221  Q
    ||||||| |||||||||||||||| ||||| |||| ||| |||||||||||    
T  13111006 caacaatattttgtgaacaaagtaataaaaactaaaatattttgatacatt 13111056  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 39949304 - 39949340
Alignment:
Q  69 tgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    |||||||||||| || |||||||||||||||||||||    
T  39949304 tgttagcttttgtaatggcagcagaagcaataagctc 39949340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 39953696 - 39953732
Alignment:
Q  69 tgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    |||||||||||| || |||||||||||||||||||||    
T  39953696 tgttagcttttgtaatggcagcagaagcaataagctc 39953732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 22804864 - 22804815
Alignment:
Q  172 aacaatgttttgtgaacaaagtactaaaagctaagatactttgatacatt 221  Q
    |||||| ||||||||| ||||||||||||| |||||||||||||||||||    
T  22804864 aacaatattttgtgaaaaaagtactaaaagttaagatactttgatacatt 22804815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 22804969 - 22804932
Alignment:
Q  68 ttgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22804969 ttgttagcttttgcaaaggcagcagaagcaataagctc 22804932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 3946130 - 3946092
Alignment:
Q  67 attgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    |||||||||||||| || |||||||||||||||||||||    
T  3946130 attgttagcttttgtaatggcagcagaagcaataagctc 3946092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 3941729 - 3941693
Alignment:
Q  69 tgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    |||||||||||| || |||||||||||||||||||||    
T  3941729 tgttagcttttgtaatggcagcagaagcaataagctc 3941693  T

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Target: scaffold1453 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1453
Description:

Target: scaffold1453; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 180 - 144
Alignment:
Q  69 tgttagcttttgcaaaggcagcagaagcaataagctc 105  Q
    |||||||||||| || |||||||||||||||||||||    
T  180 tgttagcttttgtaatggcagcagaagcaataagctc 144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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