View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20094_low_9 (Length: 657)
Name: NF20094_low_9
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 425 - 639
Target Start/End: Original strand, 45110277 - 45110492
Alignment:
| Q |
425 |
gatgaccagtgtatcagctcacgcatgcttggctcactgggacttggtgcatctggatcagtcataacctgcatgcacaaaattgttaaagaaatccatc |
524 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45110277 |
gatgaccagtgtatcagttcacgcatgcttggctcactggggcttggtgcatctggatcagtcataacctgcatgcacaaaattgttaaagaaatccatc |
45110376 |
T |
|
| Q |
525 |
aaaactttgatgatatgcatatatgcatgcaagatc-aagagatacaattgagtgactgaccagagtgtagaggttatccatgtttccagtgagagtgac |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45110377 |
aaaactttgatgatatgcatatatgcatgcaagatcaaagagatacaattgagtgactgaccagagtgtagaggttatccatgtttccagtgagagtgac |
45110476 |
T |
|
| Q |
624 |
cttgggtgggttgata |
639 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
45110477 |
cttgggtgggttgata |
45110492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 46 - 315
Target Start/End: Original strand, 45109895 - 45110165
Alignment:
| Q |
46 |
ttcttaaaatgttactaaaatattgtatgtcatccnnnnnnnnttatataaactcatccatgcaacatcttgataagtgnnnnnnnnta-atataattat |
144 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
45109895 |
ttcttaaaatgttactaaaacattgtatgtcatccaaaaaaaattatataaactcatccatgcaacatcttgataagtgaaaaaaaaaatatataattat |
45109994 |
T |
|
| Q |
145 |
ataaactcatgtacataacaagaagnnnnnnnntagttatgagaagccgatcgaaaattatttcttttatatatacctcgctttgggtttgttcctccag |
244 |
Q |
| |
|
|||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45109995 |
ataaacccatatacataacaagaagaaaaaaaatagttatgagaagccgatcgaaaattatttcttttatatatacctcgctttggatttgttcctccag |
45110094 |
T |
|
| Q |
245 |
gaatgtcaaccacaatccttaaaaaattgaaatatgaagatcagtaaattcatatgaaaatataattatcc |
315 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45110095 |
gaatgtcaaccacaatccttaaaaaatggaaacatgaagatcagtaaattcatatgaaaatataattatcc |
45110165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 46 - 315
Target Start/End: Complemental strand, 18583502 - 18583233
Alignment:
| Q |
46 |
ttcttaaaatgttactaaaatattgtatgtcatccnnnnnnnnttatataaactcatccatgcaacatcttgataagtgnnnnnnnntaatataattata |
145 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18583502 |
ttcttaaaatgttactaacacattgtatgtcatccaaatttttttatatcaactcatccatgcaacatcttgataagtgaaaaaaa-taatataattata |
18583404 |
T |
|
| Q |
146 |
taaactcatgtacataacaagaagnnnnnnnn-tagttatgagaagccgatcgaaaattatttcttttatatatacctcgctttgggtttgttcctccag |
244 |
Q |
| |
|
||||| ||||||||||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18583403 |
taaacccatgtacataattataagaagaaaaaatagttatgagaagccgatcgaaaactatttcttttatatatacctcgctttgggtttgttcctccaa |
18583304 |
T |
|
| Q |
245 |
gaatgtcaaccacaatccttaaaaaattgaaatatgaagatcagtaaattcatatgaaaatataattatcc |
315 |
Q |
| |
|
| |||||||||||||||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
18583303 |
ggatgtcaaccacaatccttaaaaaaaggaaacatgaagatcattaaattcatatcaaaatataattatcc |
18583233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 425 - 506
Target Start/End: Complemental strand, 18583134 - 18583053
Alignment:
| Q |
425 |
gatgaccagtgtatcagctcacgcatgcttggctcactgggacttggtgcatctggatcagtcataacctgcatgcacaaaa |
506 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| ||| |||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
18583134 |
gatgaccagtgtatcaactcacgcatgcttgactcactggggcttagtgcatcttgatcagtcataacctacatgcacaaaa |
18583053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University