View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_91 (Length: 239)
Name: NF20094_low_91
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_91 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 10284451 - 10284674
Alignment:
| Q |
18 |
ttgttctccaaattatgaataaaaattctatgatcttgatgttgtgttggttgaataaatcgcgatgcatcatatttaattttcgatttgcttcaacaag |
117 |
Q |
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| T |
10284451 |
ttgttctccaaattatgaataaaaattctatgatcttgatgttttgttggttgaataaatcgtgatgcatcatatttaagtttcgatttgcttcaataag |
10284550 |
T |
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| Q |
118 |
ttctcaacataaataattaatcaagttaatttcttgtgatactagtaaagcgcatc-aaattcagttcttgacctatatagcttagtttcaactagtaaa |
216 |
Q |
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| T |
10284551 |
ttctcaacataaataattaatcaagttaatttcttgtgatactagtaaagcgcatcaaaattcagttcttgagttatatagcttagtttcaactagtaaa |
10284650 |
T |
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| Q |
217 |
a-tattcacgacaagacaattttt |
239 |
Q |
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| T |
10284651 |
attattcacgacaagacaattttt |
10284674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 10265445 - 10265663
Alignment:
| Q |
18 |
ttgttctccaaattatgaataaaaattctatgatcttgatgttgtgttggttgaataaatcgcgatgcatcatatttaattttcgatttgcttcaacaag |
117 |
Q |
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| T |
10265445 |
ttgttctccaaattatgaataaaaattctatgatcttgatgttgtgttggttgaataaatcgtgatgcatcatatttaattttcgatttgcttcaacaag |
10265544 |
T |
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| Q |
118 |
ttctcaacataaataattaatcaagttaatttcttgtgatactagtaaagcgcatc-aaattcagttcttgacctatatagcttagtttcaactagtaaa |
216 |
Q |
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| T |
10265545 |
ttctcaacataaa----taatcaagttaatttcttgtgagactagtaaagcgcatcaaaattcagttcttgagttatatagcttagtttcaactagtaaa |
10265640 |
T |
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| Q |
217 |
atattcacgacaagacaattttt |
239 |
Q |
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| T |
10265641 |
atattcacgacaagacaattttt |
10265663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 10255134 - 10255195
Alignment:
| Q |
27 |
aaattatgaataaaaattctatgatcttgatgttgtgttggttgaataaatcgcgatgcatc |
88 |
Q |
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| T |
10255134 |
aaattatgaataagatttctatgatttagatgttgtgttggttgactaaatcgtgatacatc |
10255195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 10256054 - 10256099
Alignment:
| Q |
104 |
tttgcttcaacaagttctcaacataaataattaatcaagttaattt |
149 |
Q |
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| T |
10256054 |
tttgcttcaacaggttctcaacataaataactaaccaagttaattt |
10256099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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