View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20094_low_92 (Length: 237)
Name: NF20094_low_92
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20094_low_92 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 6214806 - 6215011
Alignment:
| Q |
15 |
atgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagggtcgacattactgacctgcaaatttcatttaagaaga |
114 |
Q |
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| T |
6214806 |
atgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagggtcgacattactgacctgcaaatttcatttaagaaga |
6214905 |
T |
|
| Q |
115 |
attttgtaattaatttcttatattcactattcagtaaactttattgtttatttttatccaacactttaaatttaatcagatagtctatccgttatttgtt |
214 |
Q |
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| T |
6214906 |
attttgtaattaatttcttatattcactattcagtaaactttattgtttaattttatccaacactttaaatttaatcagatagtctatccgttatttgtt |
6215005 |
T |
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| Q |
215 |
ataggt |
220 |
Q |
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|||||| |
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| T |
6215006 |
ataggt |
6215011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 6207146 - 6207257
Alignment:
| Q |
15 |
atgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagggtcgacattactgacctgcaaatttcatttaagaaga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6207146 |
atgaagagccttttgaacttctgggagatttaaataggcagcggtataatcttcagcacaagggtcgatattactgacctgcaaatttcatttaagaag- |
6207244 |
T |
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| Q |
115 |
attttgtaattaa |
127 |
Q |
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| T |
6207245 |
attttgtaattaa |
6207257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 6177336 - 6177463
Alignment:
| Q |
15 |
atgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagggtcgacattactgacctgcaa-------atttcattt |
107 |
Q |
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| T |
6177336 |
atgaagagcctcttgaactttaggtaggtttaaataagcattagtataatcttcagaacaagggtcaaaatcactaccctgcaatgttgatatttcattt |
6177435 |
T |
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| Q |
108 |
aagaagaattttgtaattaatttcttat |
135 |
Q |
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|||||| |||||| |||||||||||||| |
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| T |
6177436 |
aagaagcattttgcaattaatttcttat |
6177463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 6207293 - 6207326
Alignment:
| Q |
185 |
tttaatcagatagtctatccgttatttgttatag |
218 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
6207293 |
tttaatcagatagtctatccgttatttgctatag |
6207326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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