View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20094_low_93 (Length: 237)

Name: NF20094_low_93
Description: NF20094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20094_low_93
NF20094_low_93
[»] chr4 (26 HSPs)
chr4 (1-135)||(10284662-10284794)
chr4 (39-131)||(10265675-10265765)
chr4 (134-237)||(19103010-19103113)
chr4 (137-237)||(48275791-48275891)
chr4 (134-237)||(8029284-8029387)
chr4 (135-236)||(47245173-47245274)
chr4 (134-237)||(12875448-12875551)
chr4 (164-237)||(19107622-19107696)
chr4 (175-237)||(5270413-5270475)
chr4 (175-237)||(8694757-8694819)
chr4 (175-237)||(16422090-16422152)
chr4 (135-237)||(8028109-8028207)
chr4 (179-237)||(31274558-31274616)
chr4 (175-237)||(31728356-31728418)
chr4 (179-237)||(37263557-37263615)
chr4 (179-235)||(19907334-19907390)
chr4 (175-237)||(2820836-2820897)
chr4 (175-237)||(12822900-12822962)
chr4 (179-237)||(33467997-33468055)
chr4 (175-234)||(5925794-5925853)
chr4 (202-237)||(12878945-12878980)
chr4 (202-237)||(37258880-37258915)
chr4 (175-233)||(13060515-13060573)
chr4 (176-237)||(29349198-29349258)
chr4 (204-237)||(33462376-33462409)
chr4 (197-237)||(29984993-29985033)
[»] chr2 (19 HSPs)
chr2 (135-237)||(31329106-31329208)
chr2 (135-237)||(31335827-31335929)
chr2 (134-237)||(42925625-42925728)
chr2 (134-237)||(28604129-28604232)
chr2 (175-237)||(20101640-20101702)
chr2 (179-237)||(1934003-1934061)
chr2 (175-233)||(9179716-9179774)
chr2 (175-233)||(9184407-9184465)
chr2 (175-237)||(12361289-12361351)
chr2 (175-237)||(12797974-12798036)
chr2 (175-237)||(18345460-18345522)
chr2 (179-237)||(30651958-30652016)
chr2 (163-233)||(32080426-32080496)
chr2 (185-233)||(44630447-44630495)
chr2 (175-237)||(17967954-17968016)
chr2 (175-237)||(17974341-17974403)
chr2 (175-237)||(19891497-19891559)
chr2 (175-237)||(25496374-25496436)
chr2 (204-237)||(29678722-29678755)
[»] chr1 (9 HSPs)
chr1 (135-237)||(23191789-23191891)
chr1 (134-237)||(16036650-16036753)
chr1 (149-237)||(40166984-40167072)
chr1 (135-237)||(39586032-39586133)
chr1 (175-237)||(10136369-10136431)
chr1 (179-237)||(25844800-25844858)
chr1 (175-237)||(38622233-38622295)
chr1 (186-235)||(51040522-51040571)
chr1 (202-237)||(46697357-46697392)
[»] chr6 (14 HSPs)
chr6 (134-237)||(12690012-12690115)
chr6 (134-237)||(12797731-12797834)
chr6 (135-233)||(19674820-19674918)
chr6 (175-237)||(17600421-17600483)
chr6 (175-236)||(22694375-22694436)
chr6 (178-237)||(11569685-11569744)
chr6 (135-237)||(22610555-22610655)
chr6 (179-237)||(6406854-6406912)
chr6 (175-237)||(17963548-17963610)
chr6 (175-237)||(20747287-20747349)
chr6 (178-235)||(11533695-11533752)
chr6 (178-235)||(11559205-11559262)
chr6 (175-237)||(11429001-11429063)
chr6 (175-237)||(33686634-33686696)
[»] chr5 (21 HSPs)
chr5 (134-237)||(35678847-35678950)
chr5 (135-233)||(9725723-9725821)
chr5 (138-237)||(4872926-4873025)
chr5 (135-237)||(22832456-22832558)
chr5 (175-237)||(26668322-26668384)
chr5 (175-237)||(26939919-26939981)
chr5 (175-237)||(29166963-29167025)
chr5 (175-237)||(36424682-36424744)
chr5 (179-237)||(37247793-37247851)
chr5 (175-237)||(37646045-37646107)
chr5 (175-233)||(40150243-40150301)
chr5 (175-237)||(7452799-7452861)
chr5 (175-237)||(23757154-23757216)
chr5 (175-237)||(23822610-23822672)
chr5 (179-237)||(39519429-39519487)
chr5 (175-236)||(20180145-20180206)
chr5 (163-237)||(17162901-17162976)
chr5 (163-234)||(23689118-23689189)
chr5 (178-237)||(37536930-37536989)
chr5 (202-237)||(39524068-39524103)
chr5 (175-237)||(6154422-6154484)
[»] chr3 (19 HSPs)
chr3 (135-237)||(3656207-3656309)
chr3 (135-233)||(29351276-29351374)
chr3 (135-235)||(38891162-38891262)
chr3 (135-233)||(2206782-2206878)
chr3 (175-237)||(757354-757416)
chr3 (175-237)||(20521005-20521067)
chr3 (179-237)||(7570209-7570267)
chr3 (175-237)||(18473050-18473112)
chr3 (179-237)||(23660483-23660541)
chr3 (179-237)||(23665115-23665173)
chr3 (175-237)||(46965056-46965118)
chr3 (175-233)||(18468260-18468318)
chr3 (179-237)||(20175434-20175492)
chr3 (175-237)||(14437683-14437742)
chr3 (175-235)||(55326823-55326882)
chr3 (175-226)||(32473134-32473185)
chr3 (186-237)||(37834071-37834122)
chr3 (177-235)||(12970800-12970858)
chr3 (174-235)||(55432271-55432331)
[»] chr7 (16 HSPs)
chr7 (134-233)||(26286105-26286204)
chr7 (135-237)||(30259306-30259408)
chr7 (137-237)||(13313266-13313366)
chr7 (179-233)||(10392081-10392135)
chr7 (175-237)||(12802326-12802388)
chr7 (175-237)||(42625568-42625630)
chr7 (186-235)||(15973769-15973818)
chr7 (175-237)||(2595814-2595876)
chr7 (179-237)||(4931267-4931325)
chr7 (175-237)||(21672248-21672310)
chr7 (180-237)||(23247554-23247611)
chr7 (175-237)||(3881015-3881077)
chr7 (175-237)||(44508286-44508348)
chr7 (200-237)||(4580509-4580546)
chr7 (202-235)||(23151703-23151736)
chr7 (186-230)||(10387347-10387391)
[»] scaffold0011 (1 HSPs)
scaffold0011 (135-237)||(64845-64946)
[»] scaffold0054 (2 HSPs)
scaffold0054 (135-237)||(26485-26587)
scaffold0054 (175-237)||(30221-30283)
[»] chr8 (12 HSPs)
chr8 (175-237)||(1909937-1909999)
chr8 (175-235)||(1808496-1808556)
chr8 (179-237)||(7002689-7002747)
chr8 (200-237)||(17953162-17953199)
chr8 (179-237)||(40124888-40124946)
chr8 (175-235)||(38181272-38181332)
chr8 (202-237)||(15950589-15950624)
chr8 (202-237)||(17021299-17021334)
chr8 (202-237)||(17551736-17551771)
chr8 (204-235)||(17798093-17798124)
chr8 (135-184)||(4097307-4097356)
chr8 (175-236)||(18875375-18875436)
[»] scaffold0352 (1 HSPs)
scaffold0352 (175-237)||(8153-8215)
[»] scaffold0002 (2 HSPs)
scaffold0002 (179-237)||(5108-5166)
scaffold0002 (202-237)||(442957-442992)
[»] scaffold0240 (1 HSPs)
scaffold0240 (179-235)||(5015-5071)


Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 10284662 - 10284794
Alignment:
Q  1 caagacaatttttgtaagggtaagattcttgattacttattatgcgaaatgagaatttagtgacttgaattaaagaatatatcgttatagttaaattaaa 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  10284662 caagacaatttttgtaatggtaagattcttgattacttattatgcgaaatgagaatttagtgacttgaattaaagaatatatcgt--tagttaaattaaa 10284759  T
Q  101 ttttcaaattcggcatcataattttcaagactctt 135  Q
    ||||||||||||||||||||||||||| |||||||    
T  10284760 ttttcaaattcggcatcataattttcatgactctt 10284794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 10265675 - 10265765
Alignment:
Q  39 attatgcgaaatgagaatttagtgacttgaattaaagaatatatcgttatagttaaattaaattttcaaattcggcatcataattttcaagac 131  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  10265675 attatgcgaaatgagaatttagtgacttgaattaaagaatgtatcgt--tagttaaattaaattttcaaattcggcatcataattttcaagac 10265765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 19103113 - 19103010
Alignment:
Q  134 ttgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||| ||||||||||||||||||  | ||||||||| |||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  19103113 ttgttgaaacattggtgtgaagatggaaagaaattggacggttggaagattaaactccaagttattaaactttgatctagtgttgtgtgaattgaaaaaa 19103014  T
Q  234 taga 237  Q
    ||||    
T  19103013 taga 19103010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 48275791 - 48275891
Alignment:
Q  137 ttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaatag 236  Q
    |||||||||||||||||||| |  | |||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||||||||||||||||    
T  48275791 ttggaacattggtgtgaagacggaaagaaattggaaggttggaagattaaacatcaagttattaaactttgatcttgtgttgtgtgaattgaaaaaatag 48275890  T
Q  237 a 237  Q
    |    
T  48275891 a 48275891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 8029284 - 8029387
Alignment:
Q  134 ttgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||||||||||||||||||||||  | |||||| ||||||| ||||||| |||||||||| || ||||||||||||||| ||||||||||||||||||    
T  8029284 ttgttggaacattggtgtgaagatggaaagaaattagaaggttagaagattaaacaccaagtaattaaactttgatctagtattgtgtgaattgaaaaaa 8029383  T
Q  234 taga 237  Q
    ||||    
T  8029384 taga 8029387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 47245274 - 47245173
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaat 234  Q
    ||||||||||||||||||||||||  | ||||||||||||||| |||||| ||||| ||||||| ||| ||||||||||| |||||||||||||||||||    
T  47245274 tgttggaacattggtgtgaagatggaaagaaattggaaggttgaaagattaaacactaagttattaaagtttgatctagtattgtgtgaattgaaaaaat 47245175  T
Q  235 ag 236  Q
    ||    
T  47245174 ag 47245173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 12875551 - 12875448
Alignment:
Q  134 ttgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||||||||||||||||| | ||  | |||||||||| ||| ||||||| |||||||||| || | ||||| ||||||||||||||||||||||||||    
T  12875551 ttgttggaacattggtgtgatgttggaaggaaattggaaagttagaagattaaacaccaagtaattagactttcatctagtgttgtgtgaattgaaaaaa 12875452  T
Q  234 taga 237  Q
    ||||    
T  12875451 taga 12875448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 19107696 - 19107622
Alignment:
Q  164 aaattggaaggttggaagattgaacaccaagttatgaaactttgatct-agtgttgtgtgaattgaaaaaataga 237  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||| ||| |||||||||||||||| |||||    
T  19107696 aaattggaaggttggaagattaaacaccaagttattaaactttgatctaagtattgtgtgaattgaaaatataga 19107622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 5270413 - 5270475
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  5270413 ttggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 5270475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 8694819 - 8694757
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  8694819 ttggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 8694757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 16422152 - 16422090
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  16422152 ttggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 16422090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 8028109 - 8028207
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaat 234  Q
    ||||| ||||||| ||||||||||  | ||||| |||||||||||||||| ||||   ||| || ||||||||||| | |||||||||||||||||||||    
T  8028109 tgttgaaacattgatgtgaagatgaaaagaaat-ggaaggttggaagattaaaca---agtaattaaactttgatcgaatgttgtgtgaattgaaaaaat 8028204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 31274616 - 31274558
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  31274616 aagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 31274558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 31728356 - 31728418
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | | ||||||||| ||||||||||||||||||||||||    
T  31728356 ttggaagattaaacaccaagtaattataatttgatctaatgttgtgtgaattgaaaaaataga 31728418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 37263557 - 37263615
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  37263557 aagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 37263615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 19907390 - 19907334
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaata 235  Q
    |||||| |||||||||| || | | ||||||||||||||||||||||||||||||||    
T  19907390 aagattaaacaccaagtaattatattttgatctagtgttgtgtgaattgaaaaaata 19907334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 2820897 - 2820836
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | | ||||||||||||||||||||||||||||| ||||    
T  2820897 ttggaagattaaacaccaagtaattata-tttgatctagtgttgtgtgaattgaaaaattaga 2820836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 12822900 - 12822962
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||  |||||||| | || | ||||||||||| ||||||||||||||||||||||||    
T  12822900 ttggaagatcaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaataga 12822962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 33467997 - 33468055
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| |||||||||| || | ||||||||||| |||||||| |||||||||||||||    
T  33467997 aagattaaacaccaagtaattatactttgatctaatgttgtgtaaattgaaaaaataga 33468055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 5925794 - 5925853
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaat 234  Q
    |||||||||| || ||||||| || | |||||||| || |||||||||||||||||||||    
T  5925794 ttggaagattaaataccaagtaattatactttgatataatgttgtgtgaattgaaaaaat 5925853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 12878980 - 12878945
Alignment:
Q  202 actttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12878980 actttcatctagtgttgtgtgaattgaaaaaataga 12878945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Original strand, 37258880 - 37258915
Alignment:
Q  202 actttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    ||||||||||| ||||||||||||||||||||||||    
T  37258880 actttgatctaatgttgtgtgaattgaaaaaataga 37258915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 13060573 - 13060515
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||||||| ||| |||||| || | ||||||||||| | ||||||||||||||||||    
T  13060573 ttggaagattaaaccccaagtaattatactttgatctaatattgtgtgaattgaaaaaa 13060515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 29349198 - 29349258
Alignment:
Q  176 tggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    ||||||||| ||||| |||| || | |||||||| |||||||| ||||||||||||||||||    
T  29349198 tggaagattaaacactaagtaattatactttgat-tagtgttgagtgaattgaaaaaataga 29349258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 33462376 - 33462409
Alignment:
Q  204 tttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    ||||||||| ||||||||||||||||||||||||    
T  33462376 tttgatctaatgttgtgtgaattgaaaaaataga 33462409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 29984993 - 29985033
Alignment:
Q  197 atgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||| |||||||  |||||||||||||||||||||||||||    
T  29984993 atgagactttgaggtagtgttgtgtgaattgaaaaaataga 29985033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 31329208 - 31329106
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaat 234  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31329208 tgttggaacattggtgtgaagatggaaagaaattggaaggttggaagattaaacaccaagttattaaactttgatctagtgttgtgtgaattgaaaaaat 31329109  T
Q  235 aga 237  Q
    |||    
T  31329108 aga 31329106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 31335929 - 31335827
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaat 234  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31335929 tgttggaacattggtgtgaagatggaaagaaattggaaggttggaagattaaacaccaagttattaaactttgatctagtgttgtgtgaattgaaaaaat 31335830  T
Q  235 aga 237  Q
    |||    
T  31335829 aga 31335827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 42925625 - 42925728
Alignment:
Q  134 ttgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||||||||||||||||||||||  | |||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||    
T  42925625 ttgttggaacattggtgtgaagatggaaagaaattggaaggttggaagattaaacaccaagtaattaaactttgatctagtgttgtgtgaattgaaaaaa 42925724  T
Q  234 taga 237  Q
    ||||    
T  42925725 taga 42925728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 28604232 - 28604129
Alignment:
Q  134 ttgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||||||||||||||||||||||  | |||||||||||||||||||||| |||||||||| || ||| ||||||||||||||||||||||||||||||    
T  28604232 ttgttggaacattggtgtgaagatgaaaagaaattggaaggttggaagattaaacaccaagtaattaaattttgatctagtgttgtgtgaattgaaaaaa 28604133  T
Q  234 taga 237  Q
    ||||    
T  28604132 taga 28604129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 20101640 - 20101702
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  20101640 ttggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 20101702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 1934003 - 1934061
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  1934003 aagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 1934061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 9179716 - 9179774
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||    
T  9179716 ttggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaa 9179774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 9184407 - 9184465
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||||||| |||||||| | || ||||||||||||| ||||||||||||||||||||    
T  9184407 ttggaagattaaacaccaaataattaaactttgatctaatgttgtgtgaattgaaaaaa 9184465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 12361351 - 12361289
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||| | || | ||||||||||| ||||||||||||||||||||||||    
T  12361351 ttggaagattaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaataga 12361289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 12798036 - 12797974
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||| | || | ||||||||||| ||||||||||||||||||||||||    
T  12798036 ttggaagattaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaataga 12797974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 18345522 - 18345460
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | ||||||||||| ||||||||||||| ||||||||||    
T  18345522 ttggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattaaaaaaataga 18345460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 30652016 - 30651958
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  30652016 aagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 30651958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 32080496 - 32080426
Alignment:
Q  163 gaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||||||||||||||||||  |||||||||| |||| ||||||| | | | ||||||||||||||||||    
T  32080496 gaaattggaaggttggaagatcaaacaccaagtcatgagactttgaaccaatattgtgtgaattgaaaaaa 32080426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 44630447 - 44630495
Alignment:
Q  185 gaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    ||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  44630447 gaacaccaatttattaaattttgatctagtgttgtgtgaattgaaaaaa 44630495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 17967954 - 17968016
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||| ||||| || | ||||||||||| ||||||||||||| ||||||||||    
T  17967954 ttggaagattaaacatcaagtaattatactttgatctaatgttgtgtgaattaaaaaaataga 17968016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 17974341 - 17974403
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||| ||| | || | ||||||||||| ||||||||||||||||||||||||    
T  17974341 ttggaagattaaacatcaaataattatactttgatctaatgttgtgtgaattgaaaaaataga 17974403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 19891497 - 19891559
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| ||||||| || || | ||||||||||| | ||||||||||||||||||||||    
T  19891497 ttggaagattaaacaccatgtaattatactttgatctaatcttgtgtgaattgaaaaaataga 19891559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 25496374 - 25496436
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||| | || | ||||||||||| | ||||||||||||||||||||||    
T  25496374 ttggaagattaaacaccaaataattatactttgatctaatattgtgtgaattgaaaaaataga 25496436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 29678755 - 29678722
Alignment:
Q  204 tttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    ||||||||| ||||||||||||||||||||||||    
T  29678755 tttgatctaatgttgtgtgaattgaaaaaataga 29678722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 23191789 - 23191891
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaat 234  Q
    ||||||||||||||||||||||||  | |||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23191789 tgttggaacattggtgtgaagatggaaagaaattggaacgttggaagattaaacaccaagttattaaactttgatctagtgttgtgtgaattgaaaaaat 23191888  T
Q  235 aga 237  Q
    |||    
T  23191889 aga 23191891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 16036753 - 16036650
Alignment:
Q  134 ttgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||||||||||||||||||||||  | ||||||  |||||||||||||| |||||||||| |  ||||||||||||||||||||||||||||||||||    
T  16036753 ttgttggaacattggtgtgaagatggaaagaaattacaaggttggaagattaaacaccaagtaactaaactttgatctagtgttgtgtgaattgaaaaaa 16036654  T
Q  234 taga 237  Q
    ||||    
T  16036653 taga 16036650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 40167072 - 40166984
Alignment:
Q  149 tgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    ||||||||||  | |||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  40167072 tgtgaagatgaaaagaaattggaaggttggaagattaaacaccaagttattaaactttgatctagtattgtgtgaattgaaaaaataga 40166984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 39586032 - 39586133
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaat 234  Q
    ||||||||||||||||||||||||  | ||||||| || |||| |||||| || | |||||||| |||||||||| |||| |||||| ||||||||||||    
T  39586032 tgttggaacattggtgtgaagatggaaggaaattgaaatgttgaaagattaaagatcaagttattaaactttgatatagtattgtgt-aattgaaaaaat 39586130  T
Q  235 aga 237  Q
    |||    
T  39586131 aga 39586133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 10136431 - 10136369
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  10136431 ttggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 10136369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 25844858 - 25844800
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  25844858 aagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 25844800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 38622295 - 38622233
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| || | ||||| || | ||||||||||| ||||||||||||||||||||||||    
T  38622295 ttggaagattaaaaatcaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 38622233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 51040522 - 51040571
Alignment:
Q  186 aacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaata 235  Q
    |||||||||| || | ||||||||||| ||||||||||||||||||||||    
T  51040522 aacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaata 51040571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 46697392 - 46697357
Alignment:
Q  202 actttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||| |||||||||||||||||||||||||||    
T  46697392 actttgatttagtgttgtgtgaattgaaaaaataga 46697357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 12690115 - 12690012
Alignment:
Q  134 ttgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||||||||||||||||||||||  | |||||||||||||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||||    
T  12690115 ttgttggaacattggtgtgaagatggaaagaaattggaaggttggaaaattaaacaccaaattattaaactttgatctagtgttgtgtgaattgaaaaaa 12690016  T
Q  234 taga 237  Q
    ||||    
T  12690015 taga 12690012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 12797731 - 12797834
Alignment:
Q  134 ttgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    ||||||||| |||||||||||| ||  | ||||||| |||||||||||||| |||||||||| || | ||||||||||||||||||||||||||||||||    
T  12797731 ttgttggaatattggtgtgaagttggaaggaaattgaaaggttggaagattaaacaccaagtaattagactttgatctagtgttgtgtgaattgaaaaaa 12797830  T
Q  234 taga 237  Q
    ||||    
T  12797831 taga 12797834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 19674918 - 19674820
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||||||| |||||||||||||  |  |||||||||||||| |||||| |||||||| | || |||||||||||||||||||||||||||| |||||    
T  19674918 tgttggaacaatggtgtgaagatggaaataaattggaaggttgaaagattaaacaccaaataattaaactttgatctagtgttgtgtgaattggaaaaa 19674820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 17600483 - 17600421
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  17600483 ttggaagattaaacaccaagtaatcatactttgatctaatgttgtgtgaattgaaaaaataga 17600421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 22694375 - 22694436
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaatag 236  Q
    |||||||||| |||||||||| || | ||||||||||| |||||||||||||||||||||||    
T  22694375 ttggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatag 22694436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 11569685 - 11569744
Alignment:
Q  178 gaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    ||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  11569685 gaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 11569744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 22610655 - 22610555
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaat 234  Q
    |||||||||||||||||||||     | |||||||||||||| ||||||| || ||||||| || | ||||||||||| ||||||||  |||||||||||    
T  22610655 tgttggaacattggtgtgaagtcagaaggaaattggaaggttagaagattaaataccaagtaattagactttgatctattgttgtgt--attgaaaaaat 22610558  T
Q  235 aga 237  Q
    |||    
T  22610557 aga 22610555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 6406854 - 6406912
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  6406854 aagattaaacaccaagtaattatactttgatctattgttgtgtgaattgaaaaaataga 6406912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 17963548 - 17963610
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| |  | ||||||||||| || |||||||||||||||||||||    
T  17963548 ttggaagattaaacaccaagtaactatactttgatctaatgatgtgtgaattgaaaaaataga 17963610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 20747287 - 20747349
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||| ||||| || | |||||||| || ||||||||||||||||||||||||    
T  20747287 ttggaagattaaacatcaagtaattatactttgatttaatgttgtgtgaattgaaaaaataga 20747349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 11533695 - 11533752
Alignment:
Q  178 gaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaata 235  Q
    ||||||| |||||||||| || | | ||||||||| ||||||||||||||||||||||    
T  11533695 gaagattaaacaccaagtaattatagtttgatctaatgttgtgtgaattgaaaaaata 11533752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 11559205 - 11559262
Alignment:
Q  178 gaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaata 235  Q
    ||||||| |||||||||| || | | ||||||||| ||||||||||||||||||||||    
T  11559205 gaagattaaacaccaagtaattatagtttgatctaatgttgtgtgaattgaaaaaata 11559262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 11429063 - 11429001
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||  | || | ||||||||||| ||||| ||||||||||||||||||    
T  11429063 ttggaagattaaacaccagataattatactttgatctaatgttgcgtgaattgaaaaaataga 11429001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 33686634 - 33686696
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||| ||| | || | ||||||||||| | ||||||||||||||||||||||    
T  33686634 ttggaagattaaacatcaaataattatactttgatctaattttgtgtgaattgaaaaaataga 33686696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 35678847 - 35678950
Alignment:
Q  134 ttgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    ||||||||||||||||||| |||||  | |||||||||||||||||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||    
T  35678847 ttgttggaacattggtgtgcagatggaaagaaattggaaggttggaagattaaacatcaagtaattaaactttgatctagtgttgtgtgaattgaaaaaa 35678946  T
Q  234 taga 237  Q
    ||||    
T  35678947 taga 35678950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 9725723 - 9725821
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    ||||||||||||||||| ||||||  | |||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||    
T  9725723 tgttggaacattggtgtcaagatggaaagaaattggaaggttggaagattaaacaccaagttattaaactttgatatagtgttgtgtgaattgaaaaaa 9725821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 4873025 - 4872926
Alignment:
Q  138 tggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| ||||||||||||||  | ||||||| |||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||||||||    
T  4873025 tggaactttggtgtgaagatggaaagaaattgaaaggttggaagattaaacaccaaattattaaactttgatttagtgttgtgtgaattgaaaaaataga 4872926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 22832456 - 22832558
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaat 234  Q
    ||||||||||||||||||||| ||  | ||||||| |||||||||||||| |||||||||  || | | | |||| ||||||||||||||||||||||||    
T  22832456 tgttggaacattggtgtgaagttgaaaggaaattgtaaggttggaagattaaacaccaaggaattagattatgatttagtgttgtgtgaattgaaaaaat 22832555  T
Q  235 aga 237  Q
    |||    
T  22832556 aga 22832558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 26668384 - 26668322
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||| | || | ||||||||||| ||||||||||||||||||||||||    
T  26668384 ttggaagattaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaataga 26668322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 26939981 - 26939919
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||| | || | ||||||||||| ||||||||||||||||||||||||    
T  26939981 ttggaagattaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaataga 26939919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 29166963 - 29167025
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | |||||||| || ||||||||||||||||||||||||    
T  29166963 ttggaagattaaacaccaagtaattatactttgatttaatgttgtgtgaattgaaaaaataga 29167025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 36424744 - 36424682
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | ||| ||||||| ||||||||||||||||||||||||    
T  36424744 ttggaagattaaacaccaagtaattatactatgatctaatgttgtgtgaattgaaaaaataga 36424682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 37247793 - 37247851
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  37247793 aagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 37247851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 37646045 - 37646107
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||| ||||| || | ||||||||||| ||||||||||||||||||||||||    
T  37646045 ttggaagattaaacatcaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 37646107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 40150301 - 40150243
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||    
T  40150301 ttggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaa 40150243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 7452861 - 7452799
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| ||||| |||| || | ||| ||||||| ||||||||||||||||||||||||    
T  7452861 ttggaagattaaacacaaagtaattatactctgatctaatgttgtgtgaattgaaaaaataga 7452799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 23757154 - 23757216
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | |||| ||| || ||||||||||||||||||||||||    
T  23757154 ttggaagattaaacaccaagtaattatacttagatttaatgttgtgtgaattgaaaaaataga 23757216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 23822610 - 23822672
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | |||| ||| || ||||||||||||||||||||||||    
T  23822610 ttggaagattaaacaccaagtaattatacttagatttaatgttgtgtgaattgaaaaaataga 23822672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 39519487 - 39519429
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| |||||||||| |  | ||||||||||| ||||||||||||||||||||||||    
T  39519487 aagattaaacaccaagtaaatatactttgatctaatgttgtgtgaattgaaaaaataga 39519429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 20180145 - 20180206
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaatag 236  Q
    |||||||||| |||||||||| || | ||||| ||||| ||||||||||||||| |||||||    
T  20180145 ttggaagattaaacaccaagtaattatactttaatctaatgttgtgtgaattgagaaaatag 20180206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 17162976 - 17162901
Alignment:
Q  163 gaaattggaaggttggaagattgaacaccaagtta-tgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| ||||||||||||| | |||||||||||| | | | | ||||||| |||||| |||||||||||||||||    
T  17162976 gaaatttgaaggttggaagactaaacaccaagttaattagattatgatctaatgttgtatgaattgaaaaaataga 17162901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 23689189 - 23689118
Alignment:
Q  163 gaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaat 234  Q
    ||||||| |||||||||||||| ||||||||   || | |||||||||||||| | |||| |||||||||||    
T  23689189 gaaattgaaaggttggaagattaaacaccaaacaattagactttgatctagtgatttgtggattgaaaaaat 23689118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 37536930 - 37536989
Alignment:
Q  178 gaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    ||||||| |||| ||||| || | |||||||| || ||||||||||||||||||||||||    
T  37536930 gaagattaaacatcaagtaattatactttgatataatgttgtgtgaattgaaaaaataga 37536989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 39524103 - 39524068
Alignment:
Q  202 actttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    ||||||||||| ||||||||||||||||||||||||    
T  39524103 actttgatctaatgttgtgtgaattgaaaaaataga 39524068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 6154422 - 6154484
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| ||| |||| ||||| || | | ||||||||| ||||||||||||||||||||||||    
T  6154422 ttggaaaattaaacatcaagtaattatattttgatctaatgttgtgtgaattgaaaaaataga 6154484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 3656207 - 3656309
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaat 234  Q
    ||||||||||||||||||||||||  | |||| ||||||||||||||||| |||||||||| || |||||||||| ||||||||||||||||||||||||    
T  3656207 tgttggaacattggtgtgaagatggaaagaaaatggaaggttggaagattaaacaccaagtaattaaactttgatttagtgttgtgtgaattgaaaaaat 3656306  T
Q  235 aga 237  Q
    |||    
T  3656307 aga 3656309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 29351374 - 29351276
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||||| |||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  29351374 tgttggaacattggtgtgaagatggaaagaaattggaaggttggaagattaaacaccaatttattaaactttgatccagtgttgtgtgaattgaaaaaa 29351276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 38891262 - 38891162
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaat 234  Q
    ||||||||||||||||||||| ||  | |||||||||||||||||||||| |||||| ||| || ||||||||||||| |||| ||||||||||||||||    
T  38891262 tgttggaacattggtgtgaaggtggaaagaaattggaaggttggaagattaaacaccgagtaattaaactttgatctaatgttttgtgaattgaaaaaat 38891163  T
Q  235 a 235  Q
    |    
T  38891162 a 38891162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 2206782 - 2206878
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||||||||||||||||| |||  | ||||||||||||||||||| || ||||||||||||| ||| |||||| ||||||||||| |||||||||||    
T  2206782 tgttggaacattggtgtgaaaatggaaagaaattggaaggttggaag-ttaaacaccaagttattaaattttgat-tagtgttgtgtaaattgaaaaaa 2206878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 757354 - 757416
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  757354 ttggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 757416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 20521067 - 20521005
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  20521067 ttggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 20521005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 7570209 - 7570267
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  7570209 aagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 7570267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 18473112 - 18473050
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| ||||| |||| || | ||||||||||| ||||||||||||||||||||||||    
T  18473112 ttggaagattaaacacaaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 18473050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 23660483 - 23660541
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  23660483 aagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 23660541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 23665115 - 23665173
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  23665115 aagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 23665173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 46965118 - 46965056
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||| | || | ||||||||||| ||||||||||||||||||||||||    
T  46965118 ttggaagattaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaataga 46965056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 18468318 - 18468260
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||||||| |||||||||| || | | ||||||||| ||||||||||||||||||||    
T  18468318 ttggaagattaaacaccaagtaattatagtttgatctaatgttgtgtgaattgaaaaaa 18468260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 20175492 - 20175434
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| |||||||||| || | ||||||||||| |||||||| |||||||||||||||    
T  20175492 aagattaaacaccaagtaattatactttgatctaatgttgtgttaattgaaaaaataga 20175434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 14437683 - 14437742
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | ||||||||||   |||||||||||||||||||||||    
T  14437683 ttggaagattaaacaccaagtaattatactttgatct---gttgtgtgaattgaaaaaataga 14437742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 55326882 - 55326823
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaata 235  Q
    |||||||||| |||||||||| || | | ||||||||| ||||||||||||||||||||||    
T  55326882 ttggaagattaaacaccaagtaattata-tttgatctaatgttgtgtgaattgaaaaaata 55326823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 32473134 - 32473185
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaatt 226  Q
    |||||||||| |||||||||| || | ||||||||||| |||||||||||||    
T  32473134 ttggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaatt 32473185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 37834071 - 37834122
Alignment:
Q  186 aacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||| |||||||||| |||||||  |||||| ||||||||||||||||||||    
T  37834071 aacatcaagttatgagactttgagttagtgtggtgtgaattgaaaaaataga 37834122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 12970800 - 12970858
Alignment:
Q  177 ggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaata 235  Q
    |||||||| |||||||||| || | || ||||| || ||||||||||||||||||||||    
T  12970800 ggaagattaaacaccaagtaattatacgttgatttaatgttgtgtgaattgaaaaaata 12970858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 55432331 - 55432271
Alignment:
Q  174 gttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaata 235  Q
    ||||||||||| |||||||||| || | | ||||||||| || |||||||||||||||||||    
T  55432331 gttggaagattaaacaccaagtaattata-tttgatctaatgctgtgtgaattgaaaaaata 55432271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 26286105 - 26286204
Alignment:
Q  134 ttgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||||||||||||||||||||||  | |||||||||||||||||||||| |||||||||| || |||||||||||||||||||| | |||||||||||    
T  26286105 ttgttggaacattggtgtgaagatggaaagaaattggaaggttggaagattaaacaccaagtaattaaactttgatctagtgttgtataaattgaaaaaa 26286204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 30259408 - 30259306
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaat 234  Q
    |||||||||||||||||| |||||  |  |||||| |||||||||||||| || ||||||| || |||||||||||||||||| ||| ||||||||||||    
T  30259408 tgttggaacattggtgtggagatggaaataaattgaaaggttggaagattaaataccaagtaattaaactttgatctagtgttttgtaaattgaaaaaat 30259309  T
Q  235 aga 237  Q
    |||    
T  30259308 aga 30259306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 13313266 - 13313366
Alignment:
Q  137 ttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaatag 236  Q
    ||||||||||| ||||||||||  | |||| ||||||||| ||||||| ||||  ||||||  |||||||||| |||| |||||||||||||||||||||    
T  13313266 ttggaacattgatgtgaagatggaaagaaactggaaggtttgaagattaaacattaagttactaaactttgatttagtattgtgtgaattgaaaaaatag 13313365  T
Q  237 a 237  Q
    |    
T  13313366 a 13313366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 10392081 - 10392135
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaa 233  Q
    |||||| |||||||||| || | ||||||||||||||||||||||||||||||||    
T  10392081 aagattaaacaccaagtaattatactttgatctagtgttgtgtgaattgaaaaaa 10392135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 12802388 - 12802326
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | ||||| ||||| ||||||||||||||||||||||||    
T  12802388 ttggaagattaaacaccaagtaattatactttaatctaatgttgtgtgaattgaaaaaataga 12802326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 42625568 - 42625630
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | ||||||||||| |||| |||||||||||||||||||    
T  42625568 ttggaagattaaacaccaagtaattatactttgatctaatgttatgtgaattgaaaaaataga 42625630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 15973818 - 15973769
Alignment:
Q  186 aacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaata 235  Q
    |||||||||| |||||||||||| |||||||||||||||| |||||||||    
T  15973818 aacaccaagtcatgaaactttgagctagtgttgtgtgaatcgaaaaaata 15973769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 2595876 - 2595814
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||| | || | ||||| ||||| ||||||||||||||||||||||||    
T  2595876 ttggaagattaaacaccaaataattacactttaatctaatgttgtgtgaattgaaaaaataga 2595814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 4931325 - 4931267
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| |||||||||| || | |||||||| || ||||||||||||||||||||||||    
T  4931325 aagattaaacaccaagtaattatactttgatataatgttgtgtgaattgaaaaaataga 4931267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 21672310 - 21672248
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||| | |||||||||| || | |||||||||||  |||||||||||||||||||||||    
T  21672310 ttggaagaataaacaccaagtaattatactttgatctaacgttgtgtgaattgaaaaaataga 21672248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 23247554 - 23247611
Alignment:
Q  180 agattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    ||||| |||||||||| || | ||||||||||| |||| |||||||||||||||||||    
T  23247554 agattaaacaccaagtaattatactttgatctaatgttatgtgaattgaaaaaataga 23247611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 3881077 - 3881015
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| || ||||||| || | ||||||||||| | ||| ||||||||||||||||||    
T  3881077 ttggaagattaaataccaagtaattatactttgatctaatattgcgtgaattgaaaaaataga 3881015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 44508286 - 44508348
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| || | ||||| || | ||||||||||| | ||||||||||||||||||||||    
T  44508286 ttggaagattaaatatcaagtaattatactttgatctaatattgtgtgaattgaaaaaataga 44508348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 4580546 - 4580509
Alignment:
Q  200 aaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  4580546 aaactttgatttagtgttgtgtgaattaaaaaaataga 4580509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 23151703 - 23151736
Alignment:
Q  202 actttgatctagtgttgtgtgaattgaaaaaata 235  Q
    ||||||||||| ||||||||||||||||||||||    
T  23151703 actttgatctaatgttgtgtgaattgaaaaaata 23151736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 10387347 - 10387391
Alignment:
Q  186 aacaccaagttatgaaactttgatctagtgttgtgtgaattgaaa 230  Q
    |||||||||| || | |||||||||||||||||||||||| ||||    
T  10387347 aacaccaagtaattatactttgatctagtgttgtgtgaatagaaa 10387391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 64845 - 64946
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaat 234  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||||| |||| ||||| || ||||||||||||||||||||||||||| |||||||    
T  64845 tgttggaacattggtgtgaagatggaaagaaattggaaggttggaagattaaaca-caagtaattaaactttgatctagtgttgtgtgaattaaaaaaat 64943  T
Q  235 aga 237  Q
    |||    
T  64944 aga 64946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 26587 - 26485
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaat 234  Q
    |||||||||||||||||||| ||   | |||||||||||||||||||||| |||||||| | || ||||||| |||||| ||||||||||||||||||||    
T  26587 tgttggaacattggtgtgaaaattgaaagaaattggaaggttggaagattaaacaccaaataattaaactttcatctagagttgtgtgaattgaaaaaat 26488  T
Q  235 aga 237  Q
    |||    
T  26487 aga 26485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 30283 - 30221
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | | ||||||||| ||||||||||||||||||||||||    
T  30283 ttggaagattaaacaccaagtaattatattttgatctaatgttgtgtgaattgaaaaaataga 30221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 1909937 - 1909999
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  1909937 ttggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 1909999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 1808556 - 1808496
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaata 235  Q
    |||||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||    
T  1808556 ttggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaata 1808496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 7002747 - 7002689
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| |||||||||| || | ||||||||||||| ||||||||||||||||||||||    
T  7002747 aagattaaacaccaagtaattagactttgatctagtattgtgtgaattgaaaaaataga 7002689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 17953162 - 17953199
Alignment:
Q  200 aaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17953162 aaactttgatctagtgttgtgtgaattgaaaaaataga 17953199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 40124888 - 40124946
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| |||||||||| |  | ||||||||||| ||||||||||||||||||||||||    
T  40124888 aagattaaacaccaagtaaatatactttgatctaatgttgtgtgaattgaaaaaataga 40124946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 38181272 - 38181332
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaata 235  Q
    |||||| ||| |||| ||||| || | ||||||||||| ||||||||||||||||||||||    
T  38181272 ttggaacattaaacatcaagtaattatactttgatctaatgttgtgtgaattgaaaaaata 38181332  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Original strand, 15950589 - 15950624
Alignment:
Q  202 actttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    ||||||||||| ||||||||||||||||||||||||    
T  15950589 actttgatctaatgttgtgtgaattgaaaaaataga 15950624  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 17021334 - 17021299
Alignment:
Q  202 actttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    ||||||||||| ||||||||||||||||||||||||    
T  17021334 actttgatctaatgttgtgtgaattgaaaaaataga 17021299  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 17551771 - 17551736
Alignment:
Q  202 actttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    ||||||||||| ||||||||||||||||||||||||    
T  17551771 actttgatctaatgttgtgtgaattgaaaaaataga 17551736  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 235
Target Start/End: Complemental strand, 17798124 - 17798093
Alignment:
Q  204 tttgatctagtgttgtgtgaattgaaaaaata 235  Q
    ||||||||||||||||||||||||||||||||    
T  17798124 tttgatctagtgttgtgtgaattgaaaaaata 17798093  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 4097356 - 4097307
Alignment:
Q  135 tgttggaacattggtgtgaagatgttatgaaattggaaggttggaagatt 184  Q
    ||||||||||||| |||||||||   | ||||||||||||||||||||||    
T  4097356 tgttggaacattgatgtgaagatagaaagaaattggaaggttggaagatt 4097307  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 18875375 - 18875436
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaatag 236  Q
    |||||||||| || ||  ||| || ||| ||||||||| |||||||||||||||||||||||    
T  18875375 ttggaagattaaatactgagtaattaaattttgatctaatgttgtgtgaattgaaaaaatag 18875436  T

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Target: scaffold0352 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 8215 - 8153
Alignment:
Q  175 ttggaagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||||||| |||||||||| || | |||||||| || ||||||||||||||||||||||||    
T  8215 ttggaagattaaacaccaagtaattatactttgatttaatgttgtgtgaattgaaaaaataga 8153  T

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Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 5166 - 5108
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    |||||| ||||||||||||  | ||||||||||| ||||||||||||||||||||||||    
T  5166 aagattaaacaccaagttaatatactttgatctaatgttgtgtgaattgaaaaaataga 5108  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Original strand, 442957 - 442992
Alignment:
Q  202 actttgatctagtgttgtgtgaattgaaaaaataga 237  Q
    ||||||||||| ||||||||||||||||||||||||    
T  442957 actttgatctaatgttgtgtgaattgaaaaaataga 442992  T

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Target: scaffold0240 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 5071 - 5015
Alignment:
Q  179 aagattgaacaccaagttatgaaactttgatctagtgttgtgtgaattgaaaaaata 235  Q
    |||||| ||||||| || || | ||||||||||| ||||||||||||||||||||||    
T  5071 aagattaaacaccacgtaattatactttgatctaatgttgtgtgaattgaaaaaata 5015  T

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