View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20095_high_1 (Length: 456)
Name: NF20095_high_1
Description: NF20095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20095_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 48074387 - 48074834
Alignment:
| Q |
1 |
tagctaatactcttgtaatgagtacagcaacaggtctcatannnnnnn-------atacacttgattaattaaaatcaaaaccactcactagtgtcccca |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48074387 |
tagctaatactcttgtaatgagtacagcaacaggtctcatatattttttttttttatacacttgattaattaaaatcaaaaccactcactagtgtcccca |
48074486 |
T |
|
| Q |
94 |
accttaatattctgactccagttaagcacccttgcaagccattcatcgtcaaaatcaccttcttcgtcttcttccatatatttgtattcttcaacaagtt |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48074487 |
accttaatattctgactccagttaagcacccttgcaagccattcatcgtcaaaatcaccttcttcgtcttcttccatatatttgtattcttcaacaagtt |
48074586 |
T |
|
| Q |
194 |
cattagcatttgcattggagtggagatcaaccaccggtgaaaactcctccaccttcgatatcaatggtgtagttgtggaaggttgttcgggaaaagcaat |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48074587 |
cattagcatttgcattggagtggagatcaaccaccggtgaaaactcctccaccttcgatatcaatggtgtagttgtggaaggttgttcgggaaaagcaat |
48074686 |
T |
|
| Q |
294 |
gatctctttgtagaactcttgcatgagtttttctattgtttcttcttcgaaacaaaactcacttacctcatcgtctgagtcaggaagaagctcatggagc |
393 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48074687 |
gatctctttgtagaactcttgcatgagtttttctattgtttcttcttcgaaacaaaactcacttacctcatcgtccgagtcaggaagaagctcatggagc |
48074786 |
T |
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| Q |
394 |
tttctggcgagagcttcggtggtacactctgcagttgcactctctttt |
441 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48074787 |
tttctggcgagagcttcgggggtacactctgcagttgcactctctttt |
48074834 |
T |
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