View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20095_low_1 (Length: 598)
Name: NF20095_low_1
Description: NF20095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20095_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 572; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Original strand, 35047776 - 35048355
Alignment:
| Q |
1 |
tttttcacaatatttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35047776 |
tttttcacaatatttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatc |
35047875 |
T |
|
| Q |
101 |
ctcaacaaggccgtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttcaagctattatca |
200 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35047876 |
ctcagcaaggccgtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttcaagctattatca |
35047975 |
T |
|
| Q |
201 |
aggaaacaatgcgcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgcccgctggtactcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35047976 |
aggaaacaatgcgcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgcccgctggtactcg |
35048075 |
T |
|
| Q |
301 |
tctccttacaaacatttcaaaacttcagcaagatccttttatatattctaatccactagagtttcgaccagagagattcctcacaacacacaaggatatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35048076 |
tctccttacaaacatttcaaaacttcagcaagatccgtttatatattctaatccactagagtttcgaccagagagattcctcacaacacacaaggatatt |
35048175 |
T |
|
| Q |
401 |
gatctcaaaggccaacattttgagttgattccatttggtgcgggtagaagaatgtgtcccggaatatcatttggtcttaagctaattcaaataacacttg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35048176 |
gatctcaaaggccaacattttgagttgattccatttggtgcgggtagaagaatgtgtcccggaatatcatttggtcttaagctaattcaaataacacttg |
35048275 |
T |
|
| Q |
501 |
caactttgttgcatggatttgatatagtgactcaagatggaggaccagttggtatggttgaacaaagtggactgaccaac |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35048276 |
caactttgttgcatggatttgatatagtgactcaagatggaggaccagttggtatggttgaacaaagtggactgaccaac |
35048355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 580
Target Start/End: Original strand, 35026203 - 35026770
Alignment:
| Q |
13 |
tttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatcctcaacaaggcc |
112 |
Q |
| |
|
||||||| || |||||||||| | |||||||||||| || |||||| |||||| |||||| ||||||||| ||||| ||||| |||| ||||| | | |
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| T |
35026203 |
tttgcaggcactaattctagcagctacagacactacagcaggaacattgacttggactctatctttacttcttaacaatcgtgaggtcctaaacaaagtc |
35026302 |
T |
|
| Q |
113 |
gtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttcaagctattatcaaggaaacaatgc |
212 |
Q |
| |
|
| || |||||||||||||||||||||| |||||||||| ||| || |||||||| ||||| |||||||||||||| |||||||| |||||| ||| |
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| T |
35026303 |
attcatgaattagatacacaaattggtaaggaaaagatggcaatacaaacagatttgacgaagttggagtatcttcaagccattatcaaagaaacattgc |
35026402 |
T |
|
| Q |
213 |
gcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgcccgctggtactcgtctccttacaaa |
312 |
Q |
| |
|
| | | ||| | | ||||| ||| ||||||| ||||| | ||| ||||||||||||||||||| || ||||| |||||||| |||||||| || || |
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| T |
35026403 |
gtctatacccaccagcaccactgaatttgcctcacgagtctattgagaattgtaccattggtggataccacgtgccagctggtacgcgtctcctaaccaa |
35026502 |
T |
|
| Q |
313 |
catttcaaaacttcagcaagatccttttatatattctaatccactagagtttcgaccagagagattcctcacaacacacaaggatattgatctcaaaggc |
412 |
Q |
| |
|
| |||| || ||||| | |||||| | ||||||| |||| | |||||||||||||| |||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
35026503 |
cctttcgaagcttcaacgagatccaatgttatattcggatccgttggagtttcgaccagaaagattcctcacaacacacaaggatgttgatgtcaaaggc |
35026602 |
T |
|
| Q |
413 |
caacattttgagttgattccatttggtgcgggtagaagaatgtgtcccggaatatcatttggtcttaagctaattcaaataacacttgcaactttgttgc |
512 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| | || || |||||||||||||| || ||||||| |
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|
| T |
35026603 |
caacatttcgagttgattccatttggtgcaggtagaagaatgtgtcctggaatctcatttggtcttcaacttatgcaaataacacttgctacattgttgc |
35026702 |
T |
|
| Q |
513 |
atggatttgatatagtgactcaagatggaggaccagttggtatggttgaacaaagtggactgaccaac |
580 |
Q |
| |
|
|||| ||||| ||||||||| |||||||||||| |||| |||||||||| ||||||| |||||||| |
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|
| T |
35026703 |
atgggtttgacatagtgacttcagatggaggaccggttgatatggttgaaataagtggaatgaccaac |
35026770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 578
Target Start/End: Original strand, 35040166 - 35040731
Alignment:
| Q |
13 |
tttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatcctcaacaaggcc |
112 |
Q |
| |
|
||||||| || |||||||||| || ||||||||||| || | ||||| || ||| || | | ||||||||| ||||| | |||| | | ||||| ||| |
|
|
| T |
35040166 |
tttgcaggcactaattctagcaggtacagacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaagcc |
35040265 |
T |
|
| Q |
113 |
gtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagattt-gcacaagttagagtatcttcaagctattatcaaggaaacaatg |
211 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||| |||| ||| ||||||||||| ||| ||||| || ||||| |||| ||||||||||||||| || |
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|
| T |
35040266 |
attcaagaattagatacacaaattggtatggaaaatatggcaatagaatcagattttgca-aagtttgaatatctcaaagccattatcaaggaaacattg |
35040364 |
T |
|
| Q |
212 |
cgcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgcccgctggtactcgtctccttacaa |
311 |
Q |
| |
|
|| ||| ||| ||| ||||| |||||||||||||||||| ||||||||||||| |||||||||| || ||||| || ||||| |||||| | || | |
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|
| T |
35040365 |
cgtctgtacccagccgcaccactcgatgtgcctcatgagtccattgaagattgtaccgttggtggataccacgtgccagccggtacgcgtctcataacta |
35040464 |
T |
|
| Q |
312 |
acatttcaaaacttcagcaagatccttttatatattctaatccactagagtttcgaccagagagattcctcacaacacacaaggatattgatctcaaagg |
411 |
Q |
| |
|
|| |||| |||||||| | |||||| | ||||||| |||| | ||||||||||||||||||||||| ||||| |||| ||| | ||| |||| || |
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|
| T |
35040465 |
acctttcgaaacttcaacgagatccaatgttatattcggatccgcatgagtttcgaccagagagattccttacaacgaacaaagatgtcgatgtcaaggg |
35040564 |
T |
|
| Q |
412 |
ccaacattttgagttgattccatttggtgcgggtagaagaatgtgtcccggaatatcatttggtcttaagctaattcaaataacacttgcaactttgttg |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||| |||| || |||||||||||||| ||||| ||| |
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|
| T |
35040565 |
ccaacattttgagttgattccatttggtgcgggtagaagaatatgtcctggaatctcatttagtcttcagctgatgcaaataacacttgctactttattg |
35040664 |
T |
|
| Q |
512 |
catggatttgatatagtgactcaagatggaggaccagttggtatggttgaacaaagtggactgacca |
578 |
Q |
| |
|
||||| ||||| || |||||| |||||||||||||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
35040665 |
catgggtttgacattgtgactaaagatggaggaccagttgatatggttgaacaaagcggactcacca |
35040731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 13 - 579
Target Start/End: Original strand, 35032149 - 35032715
Alignment:
| Q |
13 |
tttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatcctcaacaaggcc |
112 |
Q |
| |
|
||||||| ||||||||||||| | ||||| ||||| || |||||| || ||| | |||| ||||||||| ||||| | |||| | || ||||| ||| |
|
|
| T |
35032149 |
tttgcaggcattaattctagcggctacagatactaccgcaggaacattgacatggtcactatctttacttcttaacaatcctgaagttctaaacaaagcc |
35032248 |
T |
|
| Q |
113 |
gtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttcaagctattatcaaggaaacaatgc |
212 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||| |||| ||| ||||||||||| ||||| |||||||| ||||| ||||||||||||||| ||| |
|
|
| T |
35032249 |
attcaagaattagatacacaaattggtatggaaaatatggcaataaaatcagatttggcaaagttggagtatctccaagccattatcaaggaaacattgc |
35032348 |
T |
|
| Q |
213 |
gcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgcccgctggtactcgtctccttacaaa |
312 |
Q |
| |
|
| |||| ||| | | ||||| ||| ||||||||||||| | ||| |||||||||||||||||||| || ||||| ||||| || ||||||| || || |
|
|
| T |
35032349 |
gtttgtacccacctggaccactcaatttgcctcatgagtctattgaggattgtaccattggtggataccacgtgccagctggcacgtgtctcctaaccaa |
35032448 |
T |
|
| Q |
313 |
catttcaaaacttcagcaagatccttttatatattctaatccactagagtttcgaccagagagattcctcacaacacacaaggatattgatctcaaaggc |
412 |
Q |
| |
|
| ||||||||||||| | |||||| | ||||||| |||| | ||||||| |||||||||||| | |||||||||||||||| ||||| |||| ||| |
|
|
| T |
35032449 |
cctttcaaaacttcaacgagatccaatattatattcagatccgttggagtttcaaccagagagatttcacacaacacacaaggatgttgatgtcaagggc |
35032548 |
T |
|
| Q |
413 |
caacattttgagttgattccatttggtgcgggtagaagaatgtgtcccggaatatcatttggtcttaagctaattcaaataacacttgcaactttgttgc |
512 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||| ||||| ||||| |||||| ||||| || | || ||||| |||||||| | ||||||| |
|
|
| T |
35032549 |
caacattttgagttgattccatttggcgtgggtagaagaatatgtcctggaatctcatttagtcttcagttgatgcaaatcacacttgctgcattgttgc |
35032648 |
T |
|
| Q |
513 |
atggatttgatatagtgactcaagatggaggaccagttggtatggttgaacaaagtggactgaccaa |
579 |
Q |
| |
|
|||| ||| | ||||||||||||||||||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
35032649 |
atgggtttaacatagtgactcaagatggaggaccagttaatatggttgaacactgtagactgaccaa |
35032715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 475
Target Start/End: Original strand, 22941544 - 22941602
Alignment:
| Q |
417 |
attttgagttgattccatttggtgcgggtagaagaatgtgtcccggaatatcatttggt |
475 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||||||||| ||| || |||||||| |
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|
| T |
22941544 |
attttgagttcattccatttggtgctggaagaagaatgtgtccgggagtaacatttggt |
22941602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 462
Target Start/End: Complemental strand, 23610247 - 23610202
Alignment:
| Q |
417 |
attttgagttgattccatttggtgcgggtagaagaatgtgtcccgg |
462 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
23610247 |
attttgagttcattccatttggtgctggtaggagaatttgtcccgg |
23610202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 457
Target Start/End: Original strand, 41861331 - 41861375
Alignment:
| Q |
413 |
caacattttgagttgattccatttggtgcgggtagaagaatgtgt |
457 |
Q |
| |
|
||||||| |||||| || ||||||||||| ||||||||||||||| |
|
|
| T |
41861331 |
caacattatgagtttataccatttggtgctggtagaagaatgtgt |
41861375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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