View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20095_low_6 (Length: 229)
Name: NF20095_low_6
Description: NF20095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20095_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 36229473 - 36229659
Alignment:
| Q |
11 |
agcacagagttgaatctgagatttaggaggtagaccttgctctctttaacactataatctaaattactgttgaataatgatgtttttccatttcacaggc |
110 |
Q |
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| T |
36229473 |
agcacagtgttgaatctgagatttaggatgtagaccttgctctctttaacactataatctaaattactcttgaataatgatgtttttccatttcacaggc |
36229572 |
T |
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| Q |
111 |
aatccacaaactgtcagaatatctaagtttccaagtgaggaatattgcaaaggaacttgctgatgtatttgatcttccggatcatgt |
197 |
Q |
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| T |
36229573 |
aatccacaaactgtcagaatatctaagtttccaagtgaggaatattgcaaaggaacttgttgatgcatttgatcttccggatcatgt |
36229659 |
T |
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Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 38039536 - 38039732
Alignment:
| Q |
18 |
agttgaatctgagatttaggaggtagaccttgctctctttaacactataatctaaattactgttgaataatgatgtttttccatttcacaggcaatccac |
117 |
Q |
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| T |
38039536 |
agttgaatctgagatttaggatgtagaccttgctctttttaacattataatctaatttactgttgaataatgatgtttttccatttcacaggcaatccac |
38039635 |
T |
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| Q |
118 |
aaactgtcagaatatctaagtttccaagtgaggaatattgcaaaggaacttgctgatgtatttgatcttccggatcatgtgagaagggcacctattg |
214 |
Q |
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| T |
38039636 |
aaactgtcagaatatctaagtttccaagtgaggaatattgcaaaggagcttgttgatgcatttgatcttccggatcatgtaacaagggcacctattg |
38039732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 40 - 185
Target Start/End: Complemental strand, 11760732 - 11760587
Alignment:
| Q |
40 |
gtagaccttgctctctttaacactataatctaaattactgttgaataatgatgtttttccatttcacaggcaatccacaaactgtcagaatatctaagtt |
139 |
Q |
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| T |
11760732 |
gtagaccttgctctctttaacactataatctaaattattgttgaacaatgatgtttttccatttcacaggcaatccacaaactgtcagaatatctaagtt |
11760633 |
T |
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| Q |
140 |
tccaagtgaggaatattgcaaaggaacttgctgatgtatttgatct |
185 |
Q |
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| T |
11760632 |
tccaagtgaggaatattgcaaaggaacttgttgatgcatttgatct |
11760587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 48738295 - 48738231
Alignment:
| Q |
11 |
agcacagagttgaatctgagatttaggaggtagaccttgctctctttaacactataatctaaatt |
75 |
Q |
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| T |
48738295 |
agcacagagttgaatctgagatttaggaggtagaccttgctctctttaacactataatctaaatt |
48738231 |
T |
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