View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20096_high_10 (Length: 303)
Name: NF20096_high_10
Description: NF20096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20096_high_10 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 21111664 - 21111375
Alignment:
| Q |
14 |
agggagtgacactgttaaccctttactactgatggttaggtcttctccctttcacttgggtgggaccacttatagcatttggcaataagaaaaccttaga |
113 |
Q |
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| T |
21111664 |
agggactgacactgttaaccctttactactgatggttaggtcttctcactttcacttgggtgggaccacttatagcatttggcaataagaaagccttaga |
21111565 |
T |
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| Q |
114 |
cattgaggatgtccctcagctagatactggagatagtgtggtttgagcttttccaactttttcagaaaaacttgaagctgattgtggtgcagtcaatgat |
213 |
Q |
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| T |
21111564 |
cattgaggatgtcccttagctagatactggagatagtgtggtttgagtttttccaactttttcagaaaaacttgaagctgattgtggtgcagtcaatgac |
21111465 |
T |
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| Q |
214 |
cacacttaagttggttaagtcattgataatctcaggaaggaaagatattcttttcactgtttttcttgcattgttaaacaattttgcttc |
303 |
Q |
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| T |
21111464 |
cacacttaagttggttaagtcattgataatctcaggaaggaaagatattcttttcactgtttttcttgcattgttaaacaattttgcttc |
21111375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 53 - 303
Target Start/End: Complemental strand, 41453213 - 41452958
Alignment:
| Q |
53 |
gtcttctccctttcacttgggtgggaccacttatagcatttggcaataagaaaaccttagacattgaggatgtccctcagctagatactggagatagtgt |
152 |
Q |
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| T |
41453213 |
gtcttctcactttcacttgggtgggaccacttatagcatttggttataagaaaaacttagaccttgaggatgttcctcagctagatagtggagatagtgt |
41453114 |
T |
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| Q |
153 |
ggtttgagcttttccaactttttcagaaaaacttgaagctgattgtggtgcagtcaa-----tgatcacacttaagttggttaagtcattgataatctca |
247 |
Q |
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| T |
41453113 |
ggtaggagcttttccaatttttagagaaaaacttgaagctgattgtggtgcagtcaatagagtaaccacacttaagttagttaagtcattgataatctca |
41453014 |
T |
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| Q |
248 |
ggaaggaaagatattcttttcactgtttttcttgcattgttaaacaattttgcttc |
303 |
Q |
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| T |
41453013 |
gggtggaaagagattctttttactgcttttcttgcattattaaacacttttgcttc |
41452958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 53 - 303
Target Start/End: Complemental strand, 41440044 - 41439789
Alignment:
| Q |
53 |
gtcttctccctttcacttgggtgggaccacttatagcatttggcaataagaaaaccttagacattgaggatgtccctcagctagatactggagatagtgt |
152 |
Q |
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| T |
41440044 |
gtcttctcactttcacttgggtggaaccacttatagcatttggttataagaaaaccttagaccttgaggatattcctcagctagatagtggagatagtgt |
41439945 |
T |
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| Q |
153 |
ggtttgagcttttccaactttttcagaaaaacttgaagctgattgtggtgcagtcaa-----tgatcacacttaagttggttaagtcattgataatctca |
247 |
Q |
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| T |
41439944 |
cattggagtttttccaatttttagagaaaaacttgaagctgattgtggtgcagtcaatagagtaaccacacttaagttagttaagtcattaataatctca |
41439845 |
T |
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| Q |
248 |
ggaaggaaagatattcttttcactgtttttcttgcattgttaaacaattttgcttc |
303 |
Q |
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| T |
41439844 |
gggtggaaagagattcttttcactgcttttcttacattgttgaaaacttttgcttc |
41439789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 53 - 298
Target Start/End: Complemental strand, 14242198 - 14241948
Alignment:
| Q |
53 |
gtcttctccctttcacttgggtgggaccacttatagcatttggcaataagaaaaccttagacattgaggatgtccctcagctagatactggagatagtgt |
152 |
Q |
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| T |
14242198 |
gtcttctcaccttcacttgggtgagtccacttatagcatttggcaataagaagacgttagaccttgaggatgttcctcagctagatagtagagatagtgt |
14242099 |
T |
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| Q |
153 |
ggtttgagcttttccaactttttcagaaaaacttgaagctgattgtggtgcagtcaa-----tgatcacacttaagttggttaagtcattgataatctca |
247 |
Q |
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| T |
14242098 |
ggttggagcttttcctattttcagagacaaacttgaagctgattgtggtgcaatcaatagagtaaccacacttaagttggttaagtcattgataatctca |
14241999 |
T |
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| Q |
248 |
ggaaggaaagatattcttttcactgtttttcttgcattgttaaacaatttt |
298 |
Q |
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| T |
14241998 |
gggtggaaagaaattcttatcactgcttttcttgcattggtaaacactttt |
14241948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 53 - 298
Target Start/End: Original strand, 14371123 - 14371373
Alignment:
| Q |
53 |
gtcttctccctttcacttgggtgggaccacttatagcatttggcaataagaaaaccttagacattgaggatgtccctcagctagatactggagatagtgt |
152 |
Q |
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| T |
14371123 |
gtcttctcaccttcacttgggtgagtccacttatagcatttggcaataagaagacgttagaccttgaggatgttcctcagctagatagtagagatagtgt |
14371222 |
T |
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| Q |
153 |
ggtttgagcttttccaactttttcagaaaaacttgaagctgattgtggtgcagtcaa-----tgatcacacttaagttggttaagtcattgataatctca |
247 |
Q |
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| T |
14371223 |
ggttggagcttttcctattttcagagacaaacttgaagctgattgtggtgcaatcaatagagtaaccacacttaaattggttaagtctttgataatctca |
14371322 |
T |
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| Q |
248 |
ggaaggaaagatattcttttcactgtttttcttgcattgttaaacaatttt |
298 |
Q |
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| T |
14371323 |
gggaaaaaagagatttttatcactgcttctcttgcattggtaaacactttt |
14371373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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