View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20096_high_5 (Length: 345)
Name: NF20096_high_5
Description: NF20096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20096_high_5 |
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| [»] scaffold0045 (3 HSPs) |
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| [»] scaffold0457 (2 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 28 - 318
Target Start/End: Original strand, 25065 - 25354
Alignment:
| Q |
28 |
caccatgctcttcaggttcgattaaactcccatttcattaattttcaacaagttttgcttcaattaactccttgaatctatgaaaatgattattttttgt |
127 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25065 |
caccatgctcttcaggttcgattaaactcccattccattaattatcaacaagttttgcttcaattaactccttgaatctatgaaaat-attattttttgt |
25163 |
T |
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| Q |
128 |
ttctttaactggtgtttcagggacacccgttagcatgaccttattataattataacacatgtacttaaaatttcagtgtagaagaaagcttgatgacttt |
227 |
Q |
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| T |
25164 |
ttctttaactggtgtttcaggggcacccgttagcatgaccttattataattataacacatgtacttaaaatttcagtgtagaagaaagcttgatgacttt |
25263 |
T |
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| Q |
228 |
ttcgggatggaattagataacagaaagaataaagataaggtggaaacaattgatctaatggatgggttgatgcaaattgaagatgatgatg |
318 |
Q |
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| T |
25264 |
ttcgggatggaattagataacagaaagaataaagataaggtggaaacaattgatctaatggatgggttgatgcaaattgaagatgatgatg |
25354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 191 - 312
Target Start/End: Original strand, 39821 - 39945
Alignment:
| Q |
191 |
cttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggaa---acaattgatctaatg |
287 |
Q |
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| T |
39821 |
cttaaaattttagtgtagaagaaagcttgaggacattttttggatggagttaggtaaaagaaagaatgaaaataaggtgaaaagtacaagtgatctaatg |
39920 |
T |
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| Q |
288 |
gatgggttgatgcaaattgaagatg |
312 |
Q |
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| T |
39921 |
gatgggttgatgcaaattgaagatg |
39945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 189 - 312
Target Start/End: Original strand, 32435 - 32558
Alignment:
| Q |
189 |
tacttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggaaacaattgatctaatgg |
288 |
Q |
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|||| |||||||||||||||||||||| | || ||| | || ||||||||||||| || ||||| | || ||||||| ||||||| ||||||||||| |
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| T |
32435 |
tactcaaaatttcagtgtagaagaaagttggaggacatcttttggatggaattagagaaaagaaaagctgaaaataaggttgaaacaagtgatctaatgg |
32534 |
T |
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| Q |
289 |
atgggttgatgcaaattgaagatg |
312 |
Q |
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| T |
32535 |
atgggttgatgcaaattgaagatg |
32558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 180 - 318
Target Start/End: Complemental strand, 5008 - 4870
Alignment:
| Q |
180 |
taacacatgtacttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggaaacaattg |
279 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
5008 |
taacacatttaattaaaatttcagtgtagaagaaagcttgatgactttttctggattgaaatagataacagaaaaaataaagataaggtggaaacaattg |
4909 |
T |
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| Q |
280 |
atctaatggatgggttgatgcaaattgaagatgatgatg |
318 |
Q |
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| T |
4908 |
atctaatggatgggttgatgcaaattgaagatgatgatg |
4870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 5103 - 5023
Alignment:
| Q |
28 |
caccatgctcttcaggttcgattaaactcccatttcattaattttcaacaagttttgcttcaattaactccttgaatctat |
108 |
Q |
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| T |
5103 |
caccatgctcttcaggttccattaaactcccatttaattaatcatcaacaagttttgcttcaattaactccttgaatctat |
5023 |
T |
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