View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20096_high_6 (Length: 339)
Name: NF20096_high_6
Description: NF20096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20096_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 23 - 318
Target Start/End: Complemental strand, 38569124 - 38568829
Alignment:
| Q |
23 |
atcatcacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgaccaagcgaccaaggtaacataaaacc |
122 |
Q |
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| T |
38569124 |
atcatgacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgaccaagtgaccaaggtaacataaaacc |
38569025 |
T |
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| Q |
123 |
atgctacgaaattatattagttaatgaatgatttctctttttatcgtagtctagcgtggtaaatcagggagtgtcgtgtccgaacacctgcatatcaaca |
222 |
Q |
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| T |
38569024 |
atgctacgaaattatattcgttaatgaatgatttctctttttgtcgtagtctagcgtggtaaatcggggagtgtcgtgtccgaacacctgcatatcaaca |
38568925 |
T |
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| Q |
223 |
tctttgcagctatgccaaacgagctgtacttatgggatgaatgagatttttctttaatttgtagaatgaattttcagttacatgatgatgatgatg |
318 |
Q |
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| T |
38568924 |
tctttgcagctataccaaacgagctgtacttatgggatgaatgagatttttctttaatttgtagaataaattttcagttacatgatgatgatgatg |
38568829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 38527695 - 38527652
Alignment:
| Q |
39 |
tcggtcaaatgattcatagtttcggtagtaaccaaactaacacc |
82 |
Q |
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| T |
38527695 |
tcggtcaaatgattgatagttttggtagtaaccaaagtaacacc |
38527652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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