View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20096_low_1 (Length: 353)
Name: NF20096_low_1
Description: NF20096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20096_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 27888143 - 27888467
Alignment:
| Q |
18 |
gtgatgacaattttgaagcattggattttctcactcctcaagtatttgataattcttactacaaaaatttggttagtaaaataggtctatttcattctga |
117 |
Q |
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| T |
27888143 |
gtgatgacaattttgaagcattggattttctcactcctcaagtatttgataattcttactacaaaaatttggttagtaaaataggtctcttccattctga |
27888242 |
T |
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| Q |
118 |
tcaagaactctttaagggagatggcagtgaaagtgatatgttggtggaactttatagtagagactcagatgcttttgcaagagattttaaagcttccatg |
217 |
Q |
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| T |
27888243 |
tcaagaactctttaagggagatggaagtgaaagtgatatgttggtggaactttatagtagagactcagatgcttttgcaagagattttaaagcttccatg |
27888342 |
T |
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| Q |
218 |
attaagatgggtaatataaagcctcttactggaaactttggagagattagaacctattgtggaaaagttaactaatttatgcatggtttgaagtgagtga |
317 |
Q |
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| T |
27888343 |
attaagatgggtaatataaagcctcttactggaaactttggagagattagaacctattgtggaaaagttaactaatttatgcatggtttgaagtgagtga |
27888442 |
T |
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| Q |
318 |
ataaggtttatgtgttgatgatgat |
342 |
Q |
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| T |
27888443 |
ataaggtttatgtattgatgatgat |
27888467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 249
Target Start/End: Complemental strand, 31753148 - 31753007
Alignment:
| Q |
108 |
ttcattctgatcaagaactctttaagggagatggcagtgaaagtgatatgttggtggaactttatagtagagactcagatgcttttgcaagagattttaa |
207 |
Q |
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| T |
31753148 |
ttcattctgatcaagagcttttcaaaggtgatggttctcaaagtgatagattggtgcaactttatagtaaacattctcatgcttttgcttatgattttgg |
31753049 |
T |
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| Q |
208 |
agcttccatgattaagatgggtaatataaagcctcttactgg |
249 |
Q |
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| T |
31753048 |
agtttctatgattaagatgggtaacataaagccacttactgg |
31753007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 246
Target Start/End: Original strand, 31749956 - 31750094
Alignment:
| Q |
108 |
ttcattctgatcaagaactctttaagggagatggcagtgaaagtgatatgttggtggaactttatagtagagactcagatgcttttgcaagagattttaa |
207 |
Q |
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| T |
31749956 |
ttcattctgattaagagctttttaaaggtgatggttctcaaagtgataggttggtgcaactatatagtaaaaattcttatgcttttgcttatgattttgg |
31750055 |
T |
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| Q |
208 |
agcttccatgattaagatgggtaatataaagcctcttac |
246 |
Q |
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| T |
31750056 |
agtttctatgattaagatgggtaatttgaagcctcttac |
31750094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 249
Target Start/End: Complemental strand, 31760760 - 31760619
Alignment:
| Q |
108 |
ttcattctgatcaagaactctttaagggagatggcagtgaaagtgatatgttggtggaactttatagtagagactcagatgcttttgcaagagattttaa |
207 |
Q |
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|||||||||||||||| || ||||| || ||||| | ||||||||| ||||| |||||||||||| | | || |||||||||| |||||| |
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| T |
31760760 |
ttcattctgatcaagagctttttaaaggtgatggttctcaaagtgatagattggttcaactttatagtaaaaattcttatgcttttgcttatgattttgg |
31760661 |
T |
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| Q |
208 |
agcttccatgattaagatgggtaatataaagcctcttactgg |
249 |
Q |
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|| ||| ||||||||||||||||| | |||||||||||||| |
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| T |
31760660 |
agtttctatgattaagatgggtaacttgaagcctcttactgg |
31760619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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