View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20097_high_2 (Length: 415)

Name: NF20097_high_2
Description: NF20097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20097_high_2
NF20097_high_2
[»] chr7 (6 HSPs)
chr7 (31-399)||(25886721-25887093)
chr7 (112-217)||(6001435-6001540)
chr7 (111-216)||(26239915-26240020)
chr7 (110-166)||(40746031-40746087)
chr7 (117-217)||(44874351-44874451)
chr7 (111-210)||(27939160-27939259)
[»] chr6 (8 HSPs)
chr6 (111-217)||(2736166-2736272)
chr6 (109-216)||(6054383-6054490)
chr6 (111-225)||(6542708-6542821)
chr6 (117-225)||(6542948-6543056)
chr6 (117-232)||(30256777-30256891)
chr6 (111-225)||(19712923-19713037)
chr6 (111-217)||(33494518-33494624)
chr6 (117-217)||(16722812-16722912)
[»] chr3 (6 HSPs)
chr3 (135-217)||(52724009-52724091)
chr3 (111-225)||(4008656-4008770)
chr3 (111-225)||(16239562-16239676)
chr3 (122-217)||(38791460-38791555)
chr3 (111-153)||(3975357-3975399)
chr3 (113-155)||(27491396-27491438)
[»] chr2 (5 HSPs)
chr2 (111-217)||(15124547-15124653)
chr2 (113-217)||(37769944-37770048)
chr2 (110-217)||(16419481-16419588)
chr2 (113-167)||(1926442-1926496)
chr2 (110-188)||(19570972-19571050)
[»] chr5 (6 HSPs)
chr5 (123-232)||(15438841-15438950)
chr5 (111-215)||(13296873-13296977)
chr5 (117-217)||(26137114-26137214)
chr5 (127-218)||(6413441-6413532)
chr5 (111-217)||(9368809-9368915)
chr5 (170-223)||(24487553-24487606)
[»] chr1 (4 HSPs)
chr1 (111-225)||(16162904-16163018)
chr1 (111-225)||(25145484-25145598)
chr1 (111-216)||(40079132-40079237)
chr1 (170-230)||(17468310-17468370)
[»] chr4 (6 HSPs)
chr4 (115-232)||(21750045-21750161)
chr4 (111-166)||(2647973-2648028)
chr4 (111-225)||(18528216-18528330)
chr4 (123-217)||(52559783-52559877)
chr4 (111-225)||(53828522-53828636)
chr4 (111-217)||(53828288-53828394)
[»] chr8 (8 HSPs)
chr8 (111-217)||(12317025-12317131)
chr8 (117-232)||(4828257-4828372)
chr8 (159-230)||(34236695-34236766)
chr8 (184-230)||(6462925-6462971)
chr8 (109-154)||(40547562-40547607)
chr8 (170-230)||(3961457-3961517)
chr8 (122-230)||(4828034-4828142)
chr8 (111-191)||(16962245-16962325)


Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 31 - 399
Target Start/End: Original strand, 25886721 - 25887093
Alignment:
Q  31 ctagaaggtgatgtgatgtt----gcttctggtggtacgctcattcttcacaccagggatacttacaaagggaattatgatgtctcttaaaaatagtggt 126  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||    
T  25886721 ctagaaggtgatgtgatgttccttgcttctggtggtacgctcattcttcacgtcagggatacttacaaagggaattatgacgtctcttaaaaatagtggt 25886820  T
Q  127 tgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatccgatgtgaaactcttt 226  Q
    |||||||||||||| |||||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  25886821 tgggtctaacacaaccctacaaaatcgatttatgaggtaaatgttgctcccatttataaacatattgtcatatcatctcctatccgatgtgaaattcttt 25886920  T
Q  227 aacacaaggttaggtagtgtaccaatggatagcaagtgagtaagctaagtatagtgatcgtacatggagacaaactccttatttataatgtaacaccaaa 326  Q
    ||||||||||||| |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25886921 aacacaaggttagatagtgtgccaacagatagcaagtgagtaagctaagtatagtgatcgtacatggagacaaactccttatttataatgtaacaccaaa 25887020  T
Q  327 gtgatacactcctgattattgcgatctacatgttgaaaccggataaattcagtttgttgtggaaaattgaatc 399  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  25887021 gtgatacactcctgattattgctatctacatgttgaaaccggataaattcaatttattgtggaaaattgaatc 25887093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 6001435 - 6001540
Alignment:
Q  112 cttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatcc 211  Q
    ||||||||| |||||||||| ||||| || |||||||||||| | | |||||||||  |||| |||| ||| |||||||||||||  |||||| ||||||    
T  6001435 cttaaaaatcgtggttgggtttaacataaccctacaaaatcggtttctgaggtgaggattgcccccacttataaacatattgtcaggtcatcttctatcc 6001534  T
Q  212 gatgtg 217  Q
    ||||||    
T  6001535 gatgtg 6001540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 26239915 - 26240020
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    ||||| |||| ||||||||||||||||||| || |||| | |||  | |||||||||  |||| |||| ||| ||||| ||||||| | ||| |||||||    
T  26239915 tcttagaaattgtggttgggtctaacacaaccccacaataccgacttgtgaggtgaggattgcccccacttataaacacattgtcagaccatgtcctatc 26240014  T
Q  211 cgatgt 216  Q
    ||||||    
T  26240015 cgatgt 26240020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 40746031 - 40746087
Alignment:
Q  110 ctcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtga 166  Q
    |||||| |||| |||||||||||||||||||||| ||||||||| | | ||||||||    
T  40746031 ctcttagaaattgtggttgggtctaacacaatcccacaaaatcggtttgtgaggtga 40746087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 44874351 - 44874451
Alignment:
Q  117 aaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatccgatgt 216  Q
    |||| ||||||||| ||||||||| | |||||||||| | | |||||||||  || | |||| ||| ||||| |||||||  | ||||||||||||||||    
T  44874351 aaatcgtggttgggcctaacacaaccatacaaaatcggtttgtgaggtgaggatttcccccacttataaacacattgtcaggttatctcctatccgatgt 44874450  T
Q  217 g 217  Q
    |    
T  44874451 g 44874451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 27939259 - 27939160
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    ||||||||||  || |||||  ||||||||||| |||||||||   |||||||||||| |||| || ||||| ||||| ||| |||  ||||||||||||    
T  27939259 tcttaaaaattttgtttgggcataacacaatcccacaaaatcggcttatgaggtgagtattgcccctatttataaacacattttcaactcatctcctatc 27939160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 2736166 - 2736272
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    ||||| |||| |||||||||||||||||||||||||||||||  | |||||||||||  |||  |||| ||| ||||| |||||||  |||||||||| |    
T  2736166 tcttagaaatcgtggttgggtctaacacaatcctacaaaatctgtttatgaggtgaggattgtccccacttataaacacattgtcaggtcatctcctacc 2736265  T
Q  211 cgatgtg 217  Q
    |||||||    
T  2736266 cgatgtg 2736272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 6054490 - 6054383
Alignment:
Q  109 tctcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctccta 208  Q
    ||||||| |||| ||||||||||||||||||| |||||||||||| | | |||||||||  |||| |||| ||| ||| |  |||||| | |||||| ||    
T  6054490 tctcttagaaatcgtggttgggtctaacacaaccctacaaaatcggtttgtgaggtgaggattgcccccacttataaataccttgtcagaccatctctta 6054391  T
Q  209 tccgatgt 216  Q
    ||||||||    
T  6054390 tccgatgt 6054383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 6542708 - 6542821
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    ||||| |||| ||||||||   |||||||| ||||||||| || | | ||||||||   |||| |||||||| ||||| ||||||| | |||||||||||    
T  6542708 tcttagaaatcgtggttggacttaacacaaccctacaaaaccggtttgtgaggtgatgattgc-cccatttataaacagattgtcagaccatctcctatc 6542806  T
Q  211 cgatgtgaaactctt 225  Q
    |||||||| ||||||    
T  6542807 cgatgtgagactctt 6542821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 225
Target Start/End: Original strand, 6542948 - 6543056
Alignment:
Q  117 aaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatccgatgt 216  Q
    |||| ||||||||||||||||||| || |||||| ||   | ||||||||   |||| |||| ||| ||||| ||||||| | |||||| ||||||||||    
T  6542948 aaatcgtggttgggtctaacacaaccccacaaaaccggcttctgaggtgatgattgcccccacttataaacacattgtcagaccatctcttatccgatgt 6543047  T
Q  217 gaaactctt 225  Q
    | |||||||    
T  6543048 ggaactctt 6543056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 30256891 - 30256777
Alignment:
Q  117 aaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatccgatgt 216  Q
    |||| ||||||||| ||||||||| || |||||| ||   | |||||||||  |||| |||| ||| |||||||||||||  ||||| ||||||||||||    
T  30256891 aaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgc-cccacttataaacatattgtcaggtcatcacctatccgatgt 30256793  T
Q  217 gaaactctttaacaca 232  Q
    |  |||||| ||||||    
T  30256792 gggactcttaaacaca 30256777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 19713037 - 19712923
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    ||||| |||| ||||||||| |||||||||||| |||||| ||   | |||||||||  |||| |||| ||| ||||| |||||||   || |||||| |    
T  19713037 tcttagaaatggtggttgggcctaacacaatcccacaaaaccggcttgtgaggtgagaattgcccccacttataaacaaattgtcaggccaactcctaac 19712938  T
Q  211 cgatgtgaaactctt 225  Q
    ||||||| |||||||    
T  19712937 cgatgtggaactctt 19712923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 33494624 - 33494518
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    ||||| |||| ||||||||| ||||||||| || |||||| ||   | |||||||||  |||| |||| ||| ||||||||| |||   |||||||||||    
T  33494624 tcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacatattttcaagccatctcctatc 33494525  T
Q  211 cgatgtg 217  Q
    |||||||    
T  33494524 cgatgtg 33494518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 16722812 - 16722912
Alignment:
Q  117 aaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatccgatgt 216  Q
    |||||||||||||| ||||||||| || |||||||||   | |||||||||  ||||||||| ||| ||||| ||| |||   |||| | ||||||||||    
T  16722812 aaatagtggttgggcctaacacaaccccacaaaatcggcttgtgaggtgagaattgctcccacttataaacagattatcaggccatcacatatccgatgt 16722911  T
Q  217 g 217  Q
    |    
T  16722912 g 16722912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 52724009 - 52724091
Alignment:
Q  135 acacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatccgatgtg 217  Q
    ||||||||||||||||||||| |||||||||||  |||| || ||||| ||||||||||| | || |||| ||||||||||||    
T  52724009 acacaatcctacaaaatcgatttatgaggtgaggattgccccaatttataaacatattgttagattatcttctatccgatgtg 52724091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 4008770 - 4008656
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    |||||||||||||||||||| |||||||||||  |||||||||   || |||||||   |  | |||||||| |||||||||||||   |||| ||||||    
T  4008770 tcttaaaaatagtggttgggcctaacacaatctcacaaaatcggcttaagaggtgatgatcacccccatttataaacatattgtcaggccatcacctatc 4008671  T
Q  211 cgatgtgaaactctt 225  Q
    ||||| || ||||||    
T  4008670 cgatgcgagactctt 4008656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 16239676 - 16239562
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    ||||| |||| ||||||||| |||||||||||| |||||| ||   | |||||||||  |||| |||| ||| ||||| |||||||   ||| |||||||    
T  16239676 tcttagaaatcgtggttgggcctaacacaatcccacaaaaccggcttgtgaggtgaggtttgcccccacttataaacacattgtcaggccatgtcctatc 16239577  T
Q  211 cgatgtgaaactctt 225  Q
    |||||||| ||||||    
T  16239576 cgatgtgagactctt 16239562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 38791460 - 38791555
Alignment:
Q  122 gtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatccgatgtg 217  Q
    ||||||||| ||||||||| || ||||||||||| | |||||||||  |||  | || ||| ||| | ||||||| | ||||||||||||||||||    
T  38791460 gtggttgggcctaacacaaccccacaaaatcgatttgtgaggtgaggattgtcctcacttataaatacattgtcagaccatctcctatccgatgtg 38791555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 3975357 - 3975399
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcg 153  Q
    ||||| ||||||||||||||||||||||||| | |||||||||    
T  3975357 tcttagaaatagtggttgggtctaacacaattccacaaaatcg 3975399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 27491396 - 27491438
Alignment:
Q  113 ttaaaaatagtggttgggtctaacacaatcctacaaaatcgat 155  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||    
T  27491396 ttaaaaattgtggttgagtctaacacaatcctacaaaaccgat 27491438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 15124547 - 15124653
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    |||||||||| ||||||||||||||||||| || |||||||||   ||||||||| |  |||| |||| ||| ||||||||||||| | ||| | |||||    
T  15124547 tcttaaaaatcgtggttgggtctaacacaaccccacaaaatcggcttatgaggtggggattgcccccacttataaacatattgtcagaccatgttctatc 15124646  T
Q  211 cgatgtg 217  Q
    |||||||    
T  15124647 cgatgtg 15124653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 37769944 - 37770048
Alignment:
Q  113 ttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatccg 212  Q
    |||||||| ||||||||||||||||||| || |||||| ||   ||||||||||   |||| |||| ||| ||||| ||||||| | || |||||| |||    
T  37769944 ttaaaaatcgtggttgggtctaacacaaccccacaaaaccggcttatgaggtgaagattgcccccacttataaacaaattgtcaaaccaactcctaaccg 37770043  T
Q  213 atgtg 217  Q
    |||||    
T  37770044 atgtg 37770048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 16419588 - 16419481
Alignment:
Q  110 ctcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctat 209  Q
    |||||| |||| ||||||||| ||||||||| || |||||| ||   | |||||||||  |||| |||| ||| ||||| ||||||| | ||| ||||||    
T  16419588 ctcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacacattgtcagaccatgtcctat 16419489  T
Q  210 ccgatgtg 217  Q
    ||||||||    
T  16419488 ccgatgtg 16419481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 1926442 - 1926496
Alignment:
Q  113 ttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgag 167  Q
    |||||||| ||||||| | ||||||||||||||||||| |||| | |||||||||    
T  1926442 ttaaaaatcgtggttgagcctaacacaatcctacaaaaccgatttgtgaggtgag 1926496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 188
Target Start/End: Original strand, 19570972 - 19571050
Alignment:
Q  110 ctcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaaca 188  Q
    |||||| |||| ||||||||| |||||||||| | ||||||||||  |||||||||||  |||| |||| ||| |||||    
T  19570972 ctcttagaaatcgtggttgggcctaacacaattccacaaaatcgacttatgaggtgaggattgcccccacttataaaca 19571050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 232
Target Start/End: Complemental strand, 15438950 - 15438841
Alignment:
Q  123 tggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatccgatgtgaaact 222  Q
    |||||| ||||||||||| |||| |||||||   | |||||||||  |||| |||| ||| ||||| ||| ||| | |||||| ||||||||||||||||    
T  15438950 tggttgagtctaacacaaccctagaaaatcggcttgtgaggtgaggattgcccccacttataaacacattatcagaccatctcatatccgatgtgaaact 15438851  T
Q  223 ctttaacaca 232  Q
    ||||||||||    
T  15438850 ctttaacaca 15438841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 13296977 - 13296873
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    ||||| |||| |||||||||||||||||||||| |||||| || | | ||||||||| ||||| |||| ||| ||||| ||||||| | || |||||| |    
T  13296977 tcttagaaatcgtggttgggtctaacacaatcccacaaaaccggtttgtgaggtgagggttgcccccacttataaacaaattgtcagaccaactcctaac 13296878  T
Q  211 cgatg 215  Q
    |||||    
T  13296877 cgatg 13296873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 26137114 - 26137214
Alignment:
Q  117 aaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatccgatgt 216  Q
    |||| |||||| ||||||||| || || |||||| || | | |||| ||||  |||| |||||||| |||||| |||||||||||| |||||| ||||||    
T  26137114 aaatcgtggttaggtctaacataaccccacaaaaccggtttgtgagatgaggattgcccccatttataaacatgttgtcatatcatttcctattcgatgt 26137213  T
Q  217 g 217  Q
    |    
T  26137214 g 26137214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 6413441 - 6413532
Alignment:
Q  127 tgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatccgatgtga 218  Q
    |||||||||||||| || |||||||||   |||||||||||  |||| |||| ||| ||||| |||||||  ||||||| ||||| ||||||    
T  6413441 tgggtctaacacaaccccacaaaatcggcttatgaggtgaggattgcccccacttataaacacattgtcaggtcatctcatatccaatgtga 6413532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 9368915 - 9368809
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    ||||| |||| ||||||||| ||||||||| || ||| |||||   | ||| |||||  |||| |||| ||| ||||| ||||||||  |||||||||||    
T  9368915 tcttagaaattgtggttgggcctaacacaaccccacataatcggcttgtgaagtgagaattgcccccacttataaacacattgtcatgccatctcctatc 9368816  T
Q  211 cgatgtg 217  Q
    |||||||    
T  9368815 cgatgtg 9368809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 24487553 - 24487606
Alignment:
Q  170 ttgctcccatttagaaacatattgtcatatcatctcctatccgatgtgaaactc 223  Q
    |||| |||||||| ||||||||||||| |||| |||||| ||||||||| ||||    
T  24487553 ttgcccccatttataaacatattgtcagatcaactcctaaccgatgtgagactc 24487606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 16163018 - 16162904
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    |||||||||| ||||||| ||||||||||| || ||||||||| | |||||||||||  |||  |||| ||| ||||| |||||||   |||| | ||||    
T  16163018 tcttaaaaattgtggttgagtctaacacaaccccacaaaatcggtttatgaggtgaggtttgtccccacttaaaaacacattgtcaggccatcacatatc 16162919  T
Q  211 cgatgtgaaactctt 225  Q
    |||||||| ||||||    
T  16162918 cgatgtgagactctt 16162904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 25145484 - 25145598
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    ||||| |||| ||||||||||||||||||| |  |||||| |||  | |||||||||  |||| |||| | | ||||| ||||||| | |||| ||||||    
T  25145484 tcttagaaatcgtggttgggtctaacacaacctcacaaaaccgacttgtgaggtgaggattgcccccactaataaacacattgtcagaccatcacctatc 25145583  T
Q  211 cgatgtgaaactctt 225  Q
    |||||||| ||||||    
T  25145584 cgatgtgagactctt 25145598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 40079237 - 40079132
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    ||||| |||| ||||||||| ||||||||| || |||||| ||   | |||||||||  |||| |||| ||| ||||| |||||||  ||||||||||||    
T  40079237 tcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacacattgtcaggtcatctcctatc 40079138  T
Q  211 cgatgt 216  Q
    ||||||    
T  40079137 cgatgt 40079132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 17468370 - 17468310
Alignment:
Q  170 ttgctcccatttagaaacatattgtcatatcatctcctatccgatgtgaaactctttaaca 230  Q
    |||| |||| ||| ||||||||||||| | |||||| |||||||||||  |||||||||||    
T  17468370 ttgcccccacttataaacatattgtcagaccatctcttatccgatgtgggactctttaaca 17468310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 21750045 - 21750161
Alignment:
Q  115 aaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatccgat 214  Q
    |||||| ||||||| |||||||| || || |||||| ||   | |||||||||   |||||||| ||| ||| |||||||||||||||||| ||||||||    
T  21750045 aaaaattgtggttgagtctaacataaccccacaaaaccggcttgtgaggtgaggaatgctcccacttataaagatattgtcatatcatctcttatccgat 21750144  T
Q  215 gtgaaactctttaacaca 232  Q
    |||| ||| |||||||||    
T  21750145 gtgagact-tttaacaca 21750161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 2647973 - 2648028
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtga 166  Q
    |||||||||| ||||||  |||||||||||||||||||||||||  ||||||||||    
T  2647973 tcttaaaaatcgtggttaagtctaacacaatcctacaaaatcgacttatgaggtga 2648028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 18528216 - 18528330
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    ||||| |||| |||||||| |||||||||| |||||||||||||| | |||||||||  ||||  ||| ||| ||||| |||| |||  |||||| |||     
T  18528216 tcttagaaatcgtggttggatctaacacaaccctacaaaatcgatttgtgaggtgaggattgccgccacttataaacacattgccatgccatctcgtatt 18528315  T
Q  211 cgatgtgaaactctt 225  Q
     ||||||| ||||||    
T  18528316 tgatgtgagactctt 18528330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 52559877 - 52559783
Alignment:
Q  123 tggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatccgatgtg 217  Q
    |||||||| |||| |||||||||||||| ||   | |||||||||  ||||||||| ||| ||||| |||||||  |||| ||||||||||||||    
T  52559877 tggttgggcctaatacaatcctacaaaaccggcttgtgaggtgagaattgctcccacttataaacacattgtcaagtcatgtcctatccgatgtg 52559783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 53828522 - 53828636
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    ||||| |||| ||||||||| ||||||||| || |||||||||   |||||||||||  |||| |||| ||| ||||| |||||||   || |||||| |    
T  53828522 tcttagaaattgtggttgggcctaacacaaccccacaaaatcggcttatgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaac 53828621  T
Q  211 cgatgtgaaactctt 225  Q
    ||||||| |||||||    
T  53828622 cgatgtggaactctt 53828636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 53828288 - 53828394
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    ||||| |||| ||| ||||| ||||||||| || ||||||||| | |||||||||||  |||| |||| ||| ||||| |||||||   || |||||| |    
T  53828288 tcttagaaattgtgattgggcctaacacaaccccacaaaatcggtttatgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaac 53828387  T
Q  211 cgatgtg 217  Q
    |||||||    
T  53828388 cgatgtg 53828394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 12317131 - 12317025
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatc 210  Q
    ||||| |||| ||||||||| |||||||||||| ||||||||    |||||||||||  |||| |||| ||| ||||| ||||||| | ||| |||| ||    
T  12317131 tcttagaaatcgtggttgggcctaacacaatcccacaaaatcagcttatgaggtgaggattgcccccacttataaacacattgtcagaccatgtcctgtc 12317032  T
Q  211 cgatgtg 217  Q
    |||||||    
T  12317031 cgatgtg 12317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 4828372 - 4828257
Alignment:
Q  117 aaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatccgatgt 216  Q
    |||| ||||||||| ||||||||| || |||||| ||   | |||||||||  |||| |||| ||| ||||| ||||||||  || |||||| |||||||    
T  4828372 aaattgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacaaattgtcatgccaactcctaaccgatgt 4828273  T
Q  217 gaaactctttaacaca 232  Q
    |  |||||||||||||    
T  4828272 gggactctttaacaca 4828257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 34236695 - 34236766
Alignment:
Q  159 tgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatccgatgtgaaactctttaaca 230  Q
    |||||||||  ||||||||| ||| ||||| ||||||| | |||||| |||||||||||  |||||||||||    
T  34236695 tgaggtgaggattgctcccacttataaacacattgtcagaccatctcttatccgatgtggcactctttaaca 34236766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 6462971 - 6462925
Alignment:
Q  184 aaacatattgtcatatcatctcctatccgatgtgaaactctttaaca 230  Q
    ||||| |||||||  ||||||| ||||||||||||||||||||||||    
T  6462971 aaacacattgtcaagtcatctcttatccgatgtgaaactctttaaca 6462925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 40547607 - 40547562
Alignment:
Q  109 tctcttaaaaatagtggttgggtctaacacaatcctacaaaatcga 154  Q
    |||||||||||| ||||||| ||||||||||||| || ||||||||    
T  40547607 tctcttaaaaattgtggttgagtctaacacaatcatataaaatcga 40547562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 3961457 - 3961517
Alignment:
Q  170 ttgctcccatttagaaacatattgtcatatcatctcctatccgatgtgaaactctttaaca 230  Q
    ||||||||||||| ||||| |||||||  ||||||| |||| ||||||  |||||||||||    
T  3961457 ttgctcccatttataaacacattgtcagctcatctcttatctgatgtgggactctttaaca 3961517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 4828142 - 4828034
Alignment:
Q  122 gtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatattgtcatatcatctcctatccgatgtgaaac 221  Q
    ||||||||| ||||||||| || |||||| ||   | |||||||||  |||  |||| ||| ||||| |||||||| ||| |||||| ||||||||  ||    
T  4828142 gtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgtccccacttataaacaaattgtcatgtcaactcctaaccgatgtgggac 4828043  T
Q  222 tctttaaca 230  Q
    |||||||||    
T  4828042 tctttaaca 4828034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 16962245 - 16962325
Alignment:
Q  111 tcttaaaaatagtggttgggtctaacacaatcctacaaaatcgatctatgaggtgagtgttgctcccatttagaaacatat 191  Q
    |||||||||| ||||||||  |||||||||||| |||||| || | | |||||||||  ||| ||||| ||| ||||||||    
T  16962245 tcttaaaaattgtggttggacctaacacaatcccacaaaaccggtttgtgaggtgagaattgttcccacttataaacatat 16962325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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